Complet list of 1afp hssp file
Complete list of 1afp.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1AFP
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-14
HEADER ANTIFUNGAL PROTEIN 11-NOV-94 1AFP
COMPND MOL_ID: 1; MOLECULE: ANTIFUNGAL PROTEIN FROM ASPERGILLUS GIGANTEUS; CH
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ASPERGILLUS GIGANTEUS; ORGANISM_TAXID:
AUTHOR R.CAMPOS-OLIVAS,M.BRUIX,J.SANTORO,J.LACADENA,A.M.DEL POZO, J.G.GAVILAN
DBREF 1AFP A 1 51 UNP P17737 AFP_ASPGI 44 94
SEQLENGTH 51
NCHAIN 1 chain(s) in 1AFP data set
NALIGN 22
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : AFP_ASPGI 1AFP 1.00 1.00 1 51 44 94 51 0 0 94 P17737 Antifungal protein OS=Aspergillus giganteus GN=afp PE=1 SV=2
2 : A1CSS4_ASPCL 0.96 0.98 1 51 44 94 51 0 0 94 A1CSS4 Antifungal protein Afp OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_080450 PE=4 SV=1
3 : A6N2V2_ASPCV 0.96 0.98 1 51 44 94 51 0 0 94 A6N2V2 Antifungal protein OS=Aspergillus clavatus GN=AFP PE=4 SV=1
4 : D3Y2M3_ASPCV 0.96 0.98 1 51 44 94 51 0 0 94 D3Y2M3 Antimicrobial peptide OS=Aspergillus clavatus PE=4 SV=1
5 : A1D8H8_NEOFI 0.45 0.61 3 51 40 90 51 2 2 94 A1D8H8 Putative uncharacterized protein OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_112130 PE=4 SV=1
6 : D4YWE1_9EURO 0.45 0.61 3 51 40 90 51 2 2 94 D4YWE1 Antifungal protein OS=Neosartorya fischeri GN=ap PE=4 SV=1
7 : E1UGW8_FUSBO 0.40 0.56 3 44 40 84 45 3 3 92 E1UGW8 Antifungal protein OS=Fusarium boothii GN=ap PE=4 SV=1
8 : E1UGW9_FUSBO 0.40 0.56 3 44 40 84 45 3 3 92 E1UGW9 Antifungal protein OS=Fusarium boothii GN=ap PE=4 SV=1
9 : E1UGX0_GIBZA 0.40 0.56 3 44 40 84 45 3 3 92 E1UGX0 Antifungal protein OS=Gibberella zeae GN=ap PE=4 SV=1
10 : E1UGX2_FUSPS 0.40 0.56 3 44 40 84 45 3 3 92 E1UGX2 Antifungal protein OS=Fusarium pseudograminearum GN=ap PE=4 SV=1
11 : E1UGX3_FUSCE 0.40 0.56 3 44 40 84 45 3 3 92 E1UGX3 Antifungal protein OS=Fusarium cerealis GN=ap PE=4 SV=1
12 : E1UGX4_9HYPO 0.40 0.56 3 44 40 84 45 3 3 92 E1UGX4 Antifungal protein OS=Fusarium polyphialidicum GN=ap PE=4 SV=1
13 : E1UGX5_FUSSP 0.40 0.56 3 44 40 84 45 3 3 92 E1UGX5 Antifungal protein OS=Fusarium sporotrichioides GN=ap PE=4 SV=1
14 : E1UGX6_FUSPO 0.40 0.56 3 44 40 84 45 3 3 92 E1UGX6 Antifungal protein OS=Fusarium poae GN=ap PE=4 SV=1
15 : I1RLE9_GIBZE 0.40 0.56 3 44 40 84 45 3 3 92 I1RLE9 Uncharacterized protein OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FG04745.1 PE=4 SV=1
16 : S7ZGG3_PENOX 0.39 0.55 3 51 40 90 51 2 2 94 S7ZGG3 Uncharacterized protein OS=Penicillium oxalicum 114-2 GN=PDE_04283 PE=4 SV=1
17 : B6HWK0_PENCW 0.37 0.50 1 51 38 91 54 3 3 92 B6HWK0 Pc24g00380 protein (Precursor) OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=Pc24g00380 PE=4 SV=1
18 : E1UGX7_9HYPO 0.37 0.50 3 51 40 91 52 3 3 92 E1UGX7 Antifungal protein OS=Fusarium avenaceum GN=ap PE=4 SV=1
19 : E1UGX8_FUSCU 0.37 0.50 3 51 40 91 52 3 3 92 E1UGX8 Antifungal protein OS=Fusarium culmorum GN=ap PE=4 SV=1
20 : E1UGY2_FUSAS 0.37 0.50 3 51 40 91 52 3 3 92 E1UGY2 Antifungal protein OS=Fusarium asiaticum GN=ap PE=4 SV=1
21 : K3U8M5_FUSPC 0.37 0.50 3 51 40 91 52 3 3 92 K3U8M5 Uncharacterized protein OS=Fusarium pseudograminearum (strain CS3096) GN=FPSE_12215 PE=4 SV=1
22 : Q01701_PENCH2KCN 0.37 0.50 1 51 38 91 54 3 3 92 Q01701 Antifungal protein OS=Penicillium chrysogenum GN=paf PE=1 SV=1
## ALIGNMENTS 1 - 22
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 80 7 0 AAAA A A
2 2 A T - 0 0 39 7 83 TTTT K K
3 3 A Y - 0 0 46 23 0 YYYYYYYYYYYYYYYYYYYYYY
4 4 A N + 0 0 85 23 124 NDDDKKWWWWWWWWWTTWWWWT
5 5 A G E -AB 16 40A 18 23 8 GGGGGGGGGGGGGGGEGGGGGG
6 6 A K E -AB 15 39A 122 23 19 KKKKEEKKKKKKKKKKKKKKKK
7 7 A C E -AB 14 38A 0 23 0 CCCCCCCCCCCCCCCCCCCCCC
8 8 A Y E > -A 13 0A 51 23 94 YYYYFFTTTTTTTTTYTTTTTT
9 9 A K T 5S+ 0 0 103 23 31 KKKKTTKKKKKKKKKTKKKKKK
10 10 A K T 5S+ 0 0 182 23 84 KKKKKKAAAAAAAAAKSAAAAS
11 11 A D T 5S- 0 0 105 23 38 DDDDDDEEEEEEEEEDKEEEEK
12 12 A N T 5 + 0 0 45 23 0 NNNNNNNNNNNNNNNNNNNNNN
13 13 A I E < -AC 8 27A 26 23 108 IIIITTRRRRRRRRRNERRRRE
14 14 A C E -AC 7 26A 0 23 0 CCCCCCCCCCCCCCCCCCCCCC
15 15 A K E +A 6 0A 68 23 0 KKKKKKKKKKKKKKKKKKKKKK
16 16 A Y E -A 5 0A 19 23 0 YYYYYYYYYYYYYYYYYYYYYY
17 17 A K - 0 0 160 23 10 KKKKKKKKKKKKKKKEKKKKKK
18 18 A A > - 0 0 9 23 75 AAAAIInnnnnnnnnNnnnnnn
19 19 A Q T 3 S+ 0 0 147 23 75 QQQQDDkkkkkkkkkDakkkka
20 20 A S T 3 S- 0 0 97 23 37 SSSSgggggggggggggggggg
21 21 A G S < S+ 0 0 24 23 57 GGGGttdddddddddtdddddd
22 22 A K + 0 0 181 23 107 KKKKYYVVVVVVVVVHTVVVVT
23 23 A T + 0 0 36 23 71 TTTTLLLLLLLLLLLFFLLLLF
24 24 A A + 0 0 42 23 86 AAAAAAQQQQQQQQQVIQQQQI
25 25 A I - 0 0 102 23 97 IIIIKKNNNNNNNNNKKNNNNK
26 26 A C E -C 14 0A 21 23 0 CCCCCCCCCCCCCCCCCCCCCC
27 27 A K E -C 13 0A 141 23 57 KKKKPPPPPPPPPPPPPPPPPP
28 28 A C - 0 0 3 23 100 CCCCSSKKKKKKKKKSKKKKKK
29 29 A Y - 0 0 148 23 50 YYYYAAFFFFFFFFFAFFFFFF
30 30 A V S S+ 0 0 94 23 88 VVVVAADDDDDDDDDADDDDDD
31 31 A K S S- 0 0 175 23 45 KKKKnnnnnnnnnnnnnnnnnn
32 32 A K - 0 0 121 23 42 KVVVkkkkkkkkkkkkkkkkkk
33 33 A C - 0 0 4 23 0 CCCCCCCCCCCCCCCCCCCCCC
34 34 A P S S- 0 0 83 23 73 PPPPEETTTTTTTTTETTTTTT
35 35 A R S > S- 0 0 186 23 28 RRRRKKKKKKKKKKKKKKKKKK
36 36 A D T 3 S+ 0 0 105 23 0 DDDDDDDDDDDDDDDDDDDDDD
37 37 A G T 3 S+ 0 0 18 23 14 GGGGGGGGGGGGGGGGNGGGGN
38 38 A A E < -B 7 0A 11 23 53 AAAANNNNNNNNNNNNNNNNNN
39 39 A K E +B 6 0A 123 23 70 KKKKKKSSSSSSSSSRKSSSSK
40 40 A C E -B 5 0A 0 23 0 CCCCCCCCCCCCCCCCCCCCCC
41 41 A E B -D 50 0B 60 23 79 EEEETTKKKKKKKKKTTKKKKT
42 42 A F - 0 0 31 23 48 FFFFYYWWWWWWWWWHVWWWWV
43 43 A D >> - 0 0 8 23 4 DDDDDDDDDDDDDDDEDDDDDD
44 44 A S T 34 S+ 0 0 53 23 16 SSSSSSSSSSSSSSSSTSSSST
45 45 A Y T 34 S- 0 0 138 14 65 YYYYYY YYAAAAY
46 46 A K T <4 S- 0 0 149 14 73 KKKKNN NNTTSSN
47 47 A G < + 0 0 34 14 84 GGGGRR GNKKKKN
48 48 A K - 0 0 77 14 74 KKKKKK NAAAAAA
49 49 A C - 0 0 6 14 89 CCCCVV VVLLLLV
50 50 A Y B D 41 0B 123 14 112 YYYYKK KDTTTTD
51 51 A C 0 0 45 14 0 CCCCCC CCCCCCC
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0 29 0 0 0 0 7 0 0 0.598 19 0.17
3 3 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 57 0 0 0 0 0 13 0 0 0 9 0 0 9 13 23 0 0 1.279 42 -0.24
5 5 A 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 0 4 0 0 23 0 0 0.179 5 0.91
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 0 9 0 0 23 0 0 0.295 9 0.81
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
8 8 A 0 0 0 0 9 0 26 0 0 0 0 65 0 0 0 0 0 0 0 0 23 0 0 0.842 28 0.06
9 9 A 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 87 0 0 0 0 23 0 0 0.387 12 0.69
10 10 A 0 0 0 0 0 0 0 0 57 0 9 0 0 0 0 35 0 0 0 0 23 0 0 0.902 30 0.16
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 57 0 35 23 0 0 0.902 30 0.61
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 23 0 0 0.000 0 1.00
13 13 A 0 0 22 0 0 0 0 0 0 0 0 9 0 0 57 0 0 9 4 0 23 0 0 1.215 40 -0.08
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 23 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 0 4 0 0 23 0 0 0.179 5 0.89
18 18 A 0 0 9 0 0 0 0 0 22 0 0 0 0 0 0 0 0 0 70 0 23 0 15 0.797 26 0.24
19 19 A 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 57 22 0 0 13 23 0 0 1.132 37 0.25
20 20 A 0 0 0 0 0 0 0 78 0 0 22 0 0 0 0 0 0 0 0 0 23 0 18 0.524 17 0.63
21 21 A 0 0 0 0 0 0 0 22 0 0 0 13 0 0 0 0 0 0 0 65 23 0 0 0.876 29 0.42
22 22 A 57 0 0 0 0 0 9 0 0 0 0 9 0 4 0 22 0 0 0 0 23 0 0 1.215 40 -0.08
23 23 A 0 65 0 0 13 0 0 0 0 0 0 22 0 0 0 0 0 0 0 0 23 0 0 0.876 29 0.29
24 24 A 4 0 9 0 0 0 0 0 30 0 0 0 0 0 0 0 57 0 0 0 23 0 0 1.033 34 0.14
25 25 A 0 0 22 0 0 0 0 0 0 0 0 0 0 0 0 22 0 0 57 0 23 0 0 0.986 32 0.03
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 78 0 0 0 0 0 22 0 0 0 0 23 0 0 0.524 17 0.42
28 28 A 0 0 0 0 0 0 0 0 0 0 13 0 22 0 0 65 0 0 0 0 23 0 0 0.876 29 -0.01
29 29 A 0 0 0 0 65 0 22 0 13 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0.876 29 0.50
30 30 A 22 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 65 23 0 0 0.876 29 0.12
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 0 0 78 0 23 0 18 0.524 17 0.55
32 32 A 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87 0 0 0 0 23 0 0 0.387 12 0.57
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 22 0 65 0 0 0 0 0 13 0 0 23 0 0 0.876 29 0.27
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 78 0 0 0 0 23 0 0 0.524 17 0.71
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 23 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 91 0 0 0 0 0 0 0 0 0 0 9 0 23 0 0 0.295 9 0.85
38 38 A 0 0 0 0 0 0 0 0 22 0 0 0 0 0 0 0 0 0 78 0 23 0 0 0.524 17 0.47
39 39 A 0 0 0 0 0 0 0 0 0 0 57 0 0 0 4 39 0 0 0 0 23 0 0 0.826 27 0.29
40 40 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 23 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 0 22 0 0 0 57 0 22 0 0 23 0 0 0.986 32 0.21
42 42 A 9 0 0 0 22 57 9 0 0 0 0 0 0 4 0 0 0 0 0 0 23 0 0 1.215 40 0.52
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 96 23 0 0 0.179 5 0.96
44 44 A 0 0 0 0 0 0 0 0 0 0 91 9 0 0 0 0 0 0 0 0 23 0 0 0.295 9 0.84
45 45 A 0 0 0 0 0 0 71 0 29 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0.598 19 0.34
46 46 A 0 0 0 0 0 0 0 0 0 0 14 14 0 0 0 36 0 0 36 0 14 0 0 1.291 43 0.27
47 47 A 0 0 0 0 0 0 0 43 0 0 0 0 0 0 14 29 0 0 14 0 14 0 0 1.277 42 0.16
48 48 A 0 0 0 0 0 0 0 0 43 0 0 0 0 0 0 50 0 0 7 0 14 0 0 0.898 29 0.25
49 49 A 36 29 0 0 0 0 0 0 0 0 0 0 36 0 0 0 0 0 0 0 14 0 0 1.093 36 0.10
50 50 A 0 0 0 0 0 0 36 0 0 0 0 29 0 0 0 21 0 0 0 14 14 0 0 1.334 44 -0.13
51 51 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 14 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
5 19 58 1 gKt
5 30 70 1 nTk
6 19 58 1 gKt
6 30 70 1 nTk
7 17 56 1 nDk
7 19 59 1 gKd
7 30 71 1 nKk
8 17 56 1 nDk
8 19 59 1 gKd
8 30 71 1 nKk
9 17 56 1 nDk
9 19 59 1 gKd
9 30 71 1 nKk
10 17 56 1 nDk
10 19 59 1 gKd
10 30 71 1 nKk
11 17 56 1 nDk
11 19 59 1 gKd
11 30 71 1 nKk
12 17 56 1 nDk
12 19 59 1 gKd
12 30 71 1 nKk
13 17 56 1 nDk
13 19 59 1 gKd
13 30 71 1 nKk
14 17 56 1 nDk
14 19 59 1 gKd
14 30 71 1 nKk
15 17 56 1 nDk
15 19 59 1 gKd
15 30 71 1 nKk
16 19 58 1 gKt
16 30 70 1 nTk
17 19 56 1 nDa
17 21 59 1 gKd
17 32 71 1 nKk
18 17 56 1 nDk
18 19 59 1 gRd
18 30 71 1 nKk
19 17 56 1 nDk
19 19 59 1 gRd
19 30 71 1 nKk
20 17 56 1 nDk
20 19 59 1 gRd
20 30 71 1 nKk
21 17 56 1 nDk
21 19 59 1 gRd
21 30 71 1 nKk
22 19 56 1 nDa
22 21 59 1 gKd
22 32 71 1 nKk
//