Complet list of 1afo hssp file
Complete list of 1afo.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1AFO
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-14
HEADER INTEGRAL MEMBRANE PROTEIN 11-MAR-97 1AFO
COMPND MOL_ID: 1; MOLECULE: GLYCOPHORIN A; CHAIN: A, B; FRAGMENT: TRANSMEMBRA
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR K.R.MACKENZIE,J.H.PRESTEGARD,D.M.ENGELMAN
DBREF 1AFO A 62 101 UNP P02724 GLPA_HUMAN 81 120
DBREF 1AFO B 62 101 UNP P02724 GLPA_HUMAN 81 120
SEQLENGTH 40
NCHAIN 2 chain(s) in 1AFO data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 77
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B8Q183_HUMAN 1.00 1.00 1 40 81 120 40 0 0 150 B8Q183 Glycophorin A OS=Homo sapiens GN=GYPA PE=2 SV=1
2 : E7EQF3_HUMAN 1.00 1.00 1 40 49 88 40 0 0 118 E7EQF3 Glycophorin-A OS=Homo sapiens GN=GYPA PE=4 SV=1
3 : GLPA_HUMAN 2KPE 1.00 1.00 1 40 81 120 40 0 0 150 P02724 Glycophorin-A OS=Homo sapiens GN=GYPA PE=1 SV=2
4 : K9JIQ8_HUMAN 1.00 1.00 1 40 79 118 40 0 0 148 K9JIQ8 Glycophorin A OS=Homo sapiens PE=2 SV=1
5 : Q03870_HUMAN 1.00 1.00 1 40 49 88 40 0 0 118 Q03870 Glycophorin Erik (STA) (Precursor) OS=Homo sapiens GN=GPErik PE=4 SV=1
6 : Q13030_HUMAN 1.00 1.00 1 40 16 55 40 0 0 85 Q13030 Glycophorin Erik I-IV (Precursor) OS=Homo sapiens GN=GPErik PE=4 SV=1
7 : Q14420_HUMAN 1.00 1.00 1 40 49 88 40 0 0 118 Q14420 Glycophorin Mz II-IV (Fragment) OS=Homo sapiens GN=HGPMz PE=2 SV=1
8 : Q14440_HUMAN 1.00 1.00 1 40 81 120 40 0 0 150 Q14440 Glycophorin Erik (Precursor) OS=Homo sapiens GN=GPErik PE=2 SV=1
9 : Q58HE6_HUMAN 1.00 1.00 1 40 81 120 40 0 0 150 Q58HE6 Glycophorin A Mta variant OS=Homo sapiens PE=2 SV=1
10 : Q58HE7_HUMAN 1.00 1.00 1 40 81 120 40 0 0 150 Q58HE7 Glycophorin A Vr variant OS=Homo sapiens GN=GYPA PE=4 SV=1
11 : Q8WWP1_HUMAN 1.00 1.00 1 40 68 107 40 0 0 132 Q8WWP1 Glycophorin A (Fragment) OS=Homo sapiens GN=GYPA PE=4 SV=1
12 : Q8WWP2_HUMAN 1.00 1.00 1 40 68 107 40 0 0 132 Q8WWP2 Glycophorin A (Fragment) OS=Homo sapiens GN=GYPA PE=4 SV=1
13 : Q8WWP4_HUMAN 1.00 1.00 1 40 68 107 40 0 0 132 Q8WWP4 Glycophorin A (Fragment) OS=Homo sapiens GN=GYPA PE=4 SV=1
14 : K9JHF2_HUMAN 0.98 1.00 1 40 81 120 40 0 0 139 K9JHF2 Glycophorin A (Fragment) OS=Homo sapiens PE=2 SV=1
15 : K9JI14_HUMAN 0.98 1.00 1 40 48 87 40 0 0 104 K9JI14 Glycophorin A (Fragment) OS=Homo sapiens PE=2 SV=1
16 : Q8WWP3_HUMAN 0.98 1.00 1 40 68 107 40 0 0 132 Q8WWP3 Glycophorin A (Fragment) OS=Homo sapiens GN=GYPA PE=4 SV=1
17 : GLPA_PANTR 0.90 0.95 1 40 80 119 40 0 0 149 Q28913 Glycophorin-A OS=Pan troglodytes GN=GYPA PE=2 SV=1
18 : H2QQ83_PANTR 0.88 0.93 1 40 80 119 40 0 0 149 H2QQ83 Glycophorin-A OS=Pan troglodytes GN=GYPA PE=4 SV=1
19 : H2RAR9_PANTR 0.88 0.93 1 40 80 119 40 0 0 149 H2RAR9 Glycophorin-A OS=Pan troglodytes GN=GYPA PE=4 SV=1
20 : O18799_9PRIM 0.88 0.98 1 40 42 81 40 0 0 100 O18799 Glycophorin A (Precursor) OS=Gorilla gorilla GN=GPA PE=2 SV=1
21 : G3RHP0_GORGO 0.85 0.97 2 40 45 83 39 0 0 113 G3RHP0 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
22 : G3RHP3_GORGO 0.85 0.97 2 40 79 117 39 0 0 147 G3RHP3 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
23 : G3RZ36_GORGO 0.85 0.97 2 40 74 112 39 0 0 142 G3RZ36 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
24 : G3S2T6_GORGO 0.85 0.97 2 40 45 83 39 0 0 113 G3S2T6 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
25 : GLPA_MACFU 0.82 0.90 1 40 61 100 40 0 0 144 P14221 Glycophorin-A OS=Macaca fuscata fuscata GN=GYPA PE=1 SV=1
26 : H2PEE5_PONAB 0.82 0.90 2 40 82 120 39 0 0 150 H2PEE5 Uncharacterized protein OS=Pongo abelii GN=GYPA PE=4 SV=1
27 : O18797_9PRIM 0.82 0.95 1 40 73 112 40 0 0 123 O18797 Glycophorin A (Precursor) OS=Gorilla gorilla GN=GPA PE=2 SV=1
28 : O18798_9PRIM 0.82 0.93 1 40 61 100 40 0 0 125 O18798 Glycophorin A (Fragment) OS=Gorilla gorilla GN=GPA PE=2 SV=1
29 : O18800_9PRIM 0.82 0.95 1 40 45 84 40 0 0 114 O18800 Glycophorin A (Precursor) OS=Gorilla gorilla GN=GPA PE=2 SV=1
30 : O18847_PONPY 0.82 0.90 2 40 66 104 39 0 0 131 O18847 Glycophorin A (Fragment) OS=Pongo pygmaeus PE=2 SV=1
31 : F6UAV1_MACMU 0.80 0.88 1 40 3 42 40 0 0 67 F6UAV1 Uncharacterized protein (Fragment) OS=Macaca mulatta GN=GYPA PE=4 SV=1
32 : G3RP08_GORGO 0.80 0.93 2 40 46 85 40 1 1 115 G3RP08 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
33 : G3RZV9_GORGO 0.80 0.93 2 40 74 113 40 1 1 143 G3RZV9 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
34 : G7MS22_MACMU 0.80 0.88 1 40 81 120 40 0 0 145 G7MS22 Putative uncharacterized protein (Fragment) OS=Macaca mulatta GN=EGK_16128 PE=4 SV=1
35 : G7P6C7_MACFA 0.80 0.88 1 40 81 120 40 0 0 145 G7P6C7 Putative uncharacterized protein (Fragment) OS=Macaca fascicularis GN=EGM_14724 PE=4 SV=1
36 : O18849_MACMU 0.80 0.88 1 40 72 111 40 0 0 142 O18849 Glycophorin A (Fragment) OS=Macaca mulatta PE=2 SV=1
37 : F6UDN1_CALJA 0.79 0.85 2 40 17 55 39 0 0 80 F6UDN1 Uncharacterized protein OS=Callithrix jacchus GN=GYPA PE=4 SV=1
38 : F6UE75_CALJA 0.79 0.85 2 40 82 120 39 0 0 150 F6UE75 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=GYPA PE=4 SV=1
39 : O18848_HYLLA 0.79 0.82 2 40 64 102 39 0 0 132 O18848 Glycophorin A (Fragment) OS=Hylobates lar PE=2 SV=1
40 : Q16336_HUMAN 0.79 0.86 1 39 81 122 42 1 3 123 Q16336 GPSAT OS=Homo sapiens GN=GPSAT PE=2 SV=1
41 : G3S552_GORGO 0.75 0.85 1 40 45 84 40 0 0 114 G3S552 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101126391 PE=4 SV=1
42 : E9PH25_HUMAN 0.73 0.83 3 40 35 75 41 1 3 105 E9PH25 Glycophorin-A OS=Homo sapiens GN=GYPA PE=4 SV=1
43 : Q14421_HUMAN 0.73 0.83 3 40 35 75 41 1 3 105 Q14421 Glycophorin Mz II-V (Fragment) OS=Homo sapiens GN=HGPMz PE=2 SV=1
44 : GLPB_PANTR 0.71 0.74 1 39 81 122 42 1 3 123 Q28914 Glycophorin-B OS=Pan troglodytes GN=GYPB PE=2 SV=1
45 : E9PD10_HUMAN 0.70 0.79 1 40 65 107 43 1 3 137 E9PD10 Glycophorin-A OS=Homo sapiens GN=GYPA PE=4 SV=1
46 : Q14419_HUMAN 0.70 0.79 1 40 65 107 43 1 3 137 Q14419 Glycophorin A OS=Homo sapiens PE=2 SV=1
47 : B8Q175_HUMAN 0.68 0.80 2 39 41 81 41 1 3 82 B8Q175 Glycophorin B OS=Homo sapiens GN=GYPB PE=4 SV=1
48 : B8Q176_HUMAN 0.68 0.80 2 39 81 121 41 1 3 122 B8Q176 Glycophorin B Miltenberger subtype III OS=Homo sapiens GN=GYPB PE=2 SV=1
49 : B8Q177_HUMAN 0.68 0.80 2 39 24 64 41 1 3 65 B8Q177 Glycophorin B Miltenberger subtype III OS=Homo sapiens GN=GYPB PE=4 SV=1
50 : B8Q179_HUMAN 0.68 0.80 2 39 18 58 41 1 3 59 B8Q179 Glycophorin B Miltenberger subtype III OS=Homo sapiens GN=GYPB PE=4 SV=1
51 : B8Q188_HUMAN 0.68 0.80 2 39 72 112 41 1 3 113 B8Q188 Glycophorin B MNS blood group OS=Homo sapiens GN=GYPB PE=4 SV=1
52 : E9NHG6_HUMAN 0.68 0.80 2 39 37 77 41 1 3 78 E9NHG6 Glycophorin B (Fragment) OS=Homo sapiens GN=GYPB PE=4 SV=1
53 : E9NHI4_HUMAN 0.68 0.80 2 39 37 77 41 1 3 78 E9NHI4 Glycophorin B (Fragment) OS=Homo sapiens GN=GYPB PE=4 SV=1
54 : E9NHJ1_HUMAN 0.68 0.78 2 39 37 77 41 1 3 78 E9NHJ1 Glycophorin B (Fragment) OS=Homo sapiens GN=GYPB PE=4 SV=1
55 : GLPB_HUMAN 0.68 0.80 2 39 50 90 41 1 3 91 P06028 Glycophorin-B OS=Homo sapiens GN=GYPB PE=1 SV=3
56 : H6TMT7_HUMAN 0.68 0.80 2 39 68 108 41 1 3 109 H6TMT7 Glycophorin B variant MiIII (Fragment) OS=Homo sapiens GN=GYPB PE=4 SV=2
57 : Q58HE8_HUMAN 0.68 0.80 2 39 81 121 41 1 3 122 Q58HE8 Hybrid glycophorin GP.Hop OS=Homo sapiens GN=GYP(B-A-B) PE=2 SV=1
58 : Q8WTQ3_HUMAN 0.68 0.80 2 39 37 77 41 1 3 78 Q8WTQ3 Glycophorin B (Fragment) OS=Homo sapiens GN=GYPB PE=4 SV=1
59 : Q8WWP0_HUMAN 0.68 0.80 2 39 37 77 41 1 3 78 Q8WWP0 Glycophorin B (Fragment) OS=Homo sapiens GN=GYPB PE=4 SV=1
60 : H2RAS0_PANTR 0.67 0.71 1 39 81 122 42 1 3 122 H2RAS0 Glycophorin-A OS=Pan troglodytes GN=GYPA PE=4 SV=1
61 : O18801_9PRIM 0.66 0.76 2 39 72 112 41 1 3 113 O18801 Glycophorin B (Precursor) OS=Gorilla gorilla GN=GPB PE=4 SV=1
62 : F6YPM7_HORSE 0.65 0.88 1 40 29 68 40 0 0 106 F6YPM7 Uncharacterized protein (Fragment) OS=Equus caballus GN=GYPA PE=4 SV=1
63 : G1TZ28_RABIT 0.65 0.74 7 40 1 34 34 0 0 59 G1TZ28 Uncharacterized protein (Fragment) OS=Oryctolagus cuniculus GN=GYPA PE=4 SV=1
64 : GLPA_HORSE 0.65 0.88 1 40 40 79 40 0 0 120 P02726 Glycophorin-A OS=Equus caballus PE=1 SV=1
65 : GLPA_PIG 0.65 0.88 7 40 58 91 34 0 0 133 P02725 Glycophorin-A OS=Sus scrofa GN=GYPA PE=1 SV=1
66 : H2RC62_PANTR 0.63 0.68 2 39 17 57 41 1 3 58 H2RC62 Uncharacterized protein OS=Pan troglodytes GN=LOC100609966 PE=4 SV=1
67 : H2RD62_PANTR 0.63 0.68 2 39 50 90 41 1 3 91 H2RD62 Uncharacterized protein OS=Pan troglodytes GN=LOC100609966 PE=4 SV=1
68 : F1RRH1_PIG 0.62 0.85 7 40 58 91 34 0 0 133 F1RRH1 Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100525591 PE=4 SV=2
69 : K7GPV6_PIG 0.62 0.85 7 40 80 113 34 0 0 164 K7GPV6 Uncharacterized protein OS=Sus scrofa GN=LOC100525591 PE=4 SV=1
70 : GLPA_MOUSE 0.61 0.79 3 40 100 137 38 0 0 168 P14220 Glycophorin-A OS=Mus musculus GN=Gypa PE=1 SV=2
71 : Q3TRN7_MOUSE 0.61 0.79 3 40 98 135 38 0 0 166 Q3TRN7 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Gypa PE=2 SV=1
72 : Q3TZH8_MOUSE 0.61 0.79 3 40 100 137 38 0 0 168 Q3TZH8 Glycophorin A OS=Mus musculus GN=Gypa PE=2 SV=1
73 : O18803_9PRIM 0.59 0.73 2 39 46 86 41 1 3 87 O18803 Glycophorin B/E (Precursor) OS=Gorilla gorilla GN=GPB/E PE=2 SV=1
74 : Q3UKI2_MOUSE 0.58 0.79 3 40 100 137 38 0 0 168 Q3UKI2 Putative uncharacterized protein OS=Mus musculus GN=Gypa PE=2 SV=1
75 : GLPA_CANFA 0.56 0.72 2 40 73 111 39 0 0 129 P02727 Glycophorin-A OS=Canis familiaris GN=GYPA PE=1 SV=3
76 : M3Y5G1_MUSPF 0.51 0.69 2 40 74 112 39 0 0 130 M3Y5G1 Uncharacterized protein OS=Mustela putorius furo PE=4 SV=1
77 : F7BMP4_ORNAN 0.49 0.80 6 40 1 35 35 0 0 63 F7BMP4 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 62 A V 0 0 178 37 18 VVVVVVVVVVVVVVVVVVVV V VII V VVV VI VII V L L
2 63 A Q - 0 0 171 67 14 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQI QSSQQQQQQQQQQQQQQQQ Q QQ
3 64 A L - 0 0 106 73 29 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVPVVLLLLLLLLLLLLLPLL L TT I
4 65 A A S S+ 0 0 80 73 60 AAAAAAAAAAAAAAAAVVVVVVVVVVVVVVVVVVVVVVVALTTVRRVVVVVVVVVVVVVVVA A VV Q
5 66 A H + 0 0 118 73 22 HHHHHHHHHHHHHHHHHHHHHHHHHHHPPHHHHHHHHHHHLKKHTTHHHHHHHHHHHHHHHH H HH H
6 67 A H + 0 0 172 74 74 HHHHHHHHHHHHHHHHRRRRRRRRERRRRRERREEEDDRHSSSPVVRRRRRRRRRRRRRPRD D PP D
7 68 A F S S- 0 0 192 78 2 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLYYFYYFFFFFFFFFFFFFFFFFFFFFFFF
8 69 A S S S- 0 0 100 78 52 SSSSSSSSSSSSSSSSSSSSPPPPSSSSSSSPPSSSSSSSSIISPPTTTTTTTTTTTTTSTSSSSSSSSP
9 70 A E - 0 0 170 78 73 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEPSSRPPVVVVVVVVVVVVVGVQVQHGGHHA
10 71 A P > - 0 0 30 78 56 PPPPPPPPPPPPPPPPPPPAAAAALPAPAPLaaLLLPPPpVsspeepppppppppppppppPIPAppAAL
11 72 A E H > S+ 0 0 109 78 68 EEEEEEEEEEEEEEEEEEEEEEEEVVEEEVVmmVVVVVVvEeeveevvvvvvvvvvvvvvvVVVEeeEEV
12 73 A I H > S+ 0 0 83 78 19 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIKKIIM
13 74 A T H > S+ 0 0 26 78 56 TTTTTTTTTTTTTTTTTTTTTTTTATTTTTATTAAATTTITTTITTIIIIIIIIIIIIIIITITTIITTI
14 75 A L H X S+ 0 0 87 78 34 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVPVGLLGGL
15 76 A I H X S+ 0 0 17 78 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
16 77 A I H X S+ 0 0 69 78 2 IIIIIIIIIIIIIIIIIIIIIIIIIVIIIVIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
17 78 A F H X S+ 0 0 114 78 14 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFFFLFFLLLLLLLLLLLLLLLLFLFLLFFL
18 79 A G H X S+ 0 0 7 78 46 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGCGGCCCCCCCCCCCCCCCGGGACCAAG
19 80 A V H X S+ 0 0 39 78 9 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVPPVVV
20 81 A M H X S+ 0 0 119 78 7 MMMMMMMMMMMMMMMIMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMVMMIMMMMMMM
21 82 A A H X S+ 0 0 56 78 13 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22 83 A G H X S+ 0 0 8 78 4 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVVGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
23 84 A V H X S+ 0 0 41 78 19 VVVVVVVVVVVVVVVVVVVIIIIIVVIIIVVIIVVVVVVIIVVVVVIIIIIIIIIIIIIGVIIILVVIII
24 85 A I H X S+ 0 0 106 78 6 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVILIILLI
25 86 A G H X S+ 0 0 35 78 23 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGLGGLLG
26 87 A T H X S+ 0 0 18 78 35 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTKKTTTTTTTTTTTTTTTTTTTTTTMIVIIMMIIT
27 88 A I H X S+ 0 0 77 78 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
28 89 A L H X S+ 0 0 97 78 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLLFFL
29 90 A L H X S+ 0 0 124 78 17 LLLLLLLLLLLLLLLLLLLLLLLLFLFLLLFLLFFFFFSLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
30 91 A I H X S+ 0 0 67 78 3 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILILIIIIII
31 92 A S H X S+ 0 0 59 78 40 SSSSSSSSSSSSSSSSYYYSSSSSSSYSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASAAYYAAS
32 93 A Y H X S+ 0 0 143 78 6 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHYYYYYYYYY
33 94 A G H X S+ 0 0 29 78 64 GGGGGGGGGGGGGGGGSSSSSSSSGCSSSCCSSCCCCCCSSGGGGGSSSSSSSTSSSSSGSVCVLSSLLC
34 95 A I H X S+ 0 0 95 78 9 IIIIIIIIIIIIIIIIIIIIIIIISIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIICISIIIIII
35 96 A R H < S+ 0 0 115 78 40 RRRRRRRRRRRRRRRRRCCRRRRRRRRRRRRRRRRRRRCRRRRRRRRRRRRRRRRRRRRRRRSRRRRGGS
36 97 A R H < S+ 0 0 192 78 24 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRLRRRRLRRRRRRRRRRRRRRRLRRRRRRRRRR
37 98 A L H < S+ 0 0 142 78 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLMMM
38 99 A I S < S+ 0 0 108 78 53 IIIIIIIIIIIIIIIIIIIIIIIIIRIIIRRIIRRRRRRIIIIIIIIIIIIIIIIIIIIIIRTRIIIIIT
39 100 A K 0 0 119 78 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
40 101 A K 0 0 265 58 11 KKKKKKKKKKKKKRRKKKKKKKKKKQKKKQKKKKKKKKK KKK KK RKRK KKK
## ALIGNMENTS 71 - 77
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 62 A V 0 0 178 37 18
2 63 A Q - 0 0 171 67 14 Q QQ
3 64 A L - 0 0 106 73 29 IILILI
4 65 A A S S+ 0 0 80 73 60 QQVQVV
5 66 A H + 0 0 118 73 22 HHHHHH
6 67 A H + 0 0 172 74 74 DDRDIPH
7 68 A F S S- 0 0 192 78 2 FFFFFFL
8 69 A S S S- 0 0 100 78 52 PPPPSSQ
9 70 A E - 0 0 170 78 73 AAVAEEQ
10 71 A P > - 0 0 30 78 56 LLpLPPP
11 72 A E H > S+ 0 0 109 78 68 VVeVVVK
12 73 A I H > S+ 0 0 83 78 19 MMKMIII
13 74 A T H > S+ 0 0 26 78 56 IIIIIIA
14 75 A L H X S+ 0 0 87 78 34 LLLLGGV
15 76 A I H X S+ 0 0 17 78 0 IIIIIII
16 77 A I H X S+ 0 0 69 78 2 IIVIIII
17 78 A F H X S+ 0 0 114 78 14 LLLLYYY
18 79 A G H X S+ 0 0 7 78 46 GGCGAAA
19 80 A V H X S+ 0 0 39 78 9 VVPVVVV
20 81 A M H X S+ 0 0 119 78 7 MMMMMMV
21 82 A A H X S+ 0 0 56 78 13 AAAALLC
22 83 A G H X S+ 0 0 8 78 4 GGGGGGG
23 84 A V H X S+ 0 0 41 78 19 IIVIIIV
24 85 A I H X S+ 0 0 106 78 6 IIIIIII
25 86 A G H X S+ 0 0 35 78 23 GGGGITG
26 87 A T H X S+ 0 0 18 78 35 TTMTTVT
27 88 A I H X S+ 0 0 77 78 2 IIMIIII
28 89 A L H X S+ 0 0 97 78 2 LLLLLLL
29 90 A L H X S+ 0 0 124 78 17 LLLLSAF
30 91 A I H X S+ 0 0 67 78 3 IIIIIII
31 92 A S H X S+ 0 0 59 78 40 SSDSAAA
32 93 A Y H X S+ 0 0 143 78 6 YYYYFFL
33 94 A G H X S+ 0 0 29 78 64 CCSCCCV
34 95 A I H X S+ 0 0 95 78 9 IIIIIII
35 96 A R H < S+ 0 0 115 78 40 SSRSGSK
36 97 A R H < S+ 0 0 192 78 24 RRRQQQV
37 98 A L H < S+ 0 0 142 78 5 MMLMLLV
38 99 A I S < S+ 0 0 108 78 53 TTITTTK
39 100 A K 0 0 119 78 0 KKKKKKK
40 101 A K 0 0 265 58 11 KK KKKK
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 62 A 81 5 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0.598 19 0.82
2 63 A 0 0 1 0 0 0 0 0 0 0 3 0 0 0 0 0 96 0 0 0 67 0 0 0.211 7 0.86
3 64 A 5 82 7 0 0 0 0 0 0 3 0 3 0 0 0 0 0 0 0 0 73 0 0 0.701 23 0.71
4 65 A 60 1 0 0 0 0 0 0 27 0 0 3 0 0 3 0 5 0 0 0 73 0 0 1.075 35 0.39
5 66 A 0 1 0 0 0 0 0 0 0 3 0 3 0 90 0 3 0 0 0 0 73 0 0 0.446 14 0.78
6 67 A 3 0 1 0 0 0 0 0 0 7 4 0 0 26 42 0 0 7 0 11 74 0 0 1.604 53 0.25
7 68 A 0 3 0 0 92 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.320 10 0.97
8 69 A 0 0 3 0 0 0 0 0 0 17 62 18 0 0 0 0 1 0 0 0 78 0 0 1.055 35 0.48
9 70 A 21 0 0 0 0 0 0 5 5 4 3 0 0 4 1 0 4 54 0 0 78 0 0 1.489 49 0.26
10 71 A 1 12 1 0 0 0 0 0 15 65 3 0 0 0 0 0 0 3 0 0 78 0 26 1.115 37 0.43
11 72 A 46 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 50 0 0 78 0 0 0.853 28 0.31
12 73 A 0 0 91 5 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 78 0 0 0.363 12 0.81
13 74 A 0 0 35 0 0 0 0 0 8 0 0 58 0 0 0 0 0 0 0 0 78 0 0 0.882 29 0.44
14 75 A 4 88 0 0 0 0 0 6 0 1 0 0 0 0 0 0 0 0 0 0 78 0 0 0.466 15 0.66
15 76 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.000 0 1.00
16 77 A 4 0 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.163 5 0.98
17 78 A 0 33 0 0 63 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.784 26 0.86
18 79 A 0 0 0 0 0 0 0 67 8 0 0 0 26 0 0 0 0 0 0 0 78 0 0 0.817 27 0.53
19 80 A 96 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 78 0 0 0.163 5 0.91
20 81 A 3 0 3 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.238 7 0.92
21 82 A 0 3 0 0 0 0 0 0 96 0 0 0 1 0 0 0 0 0 0 0 78 0 0 0.188 6 0.87
22 83 A 3 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.119 3 0.95
23 84 A 51 1 46 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.811 27 0.81
24 85 A 1 4 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.231 7 0.94
25 86 A 0 4 1 0 0 0 0 94 0 0 0 1 0 0 0 0 0 0 0 0 78 0 0 0.299 9 0.77
26 87 A 3 0 6 5 0 0 0 0 0 0 0 83 0 0 0 3 0 0 0 0 78 0 0 0.668 22 0.64
27 88 A 0 0 99 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.069 2 0.98
28 89 A 0 96 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.163 5 0.98
29 90 A 0 85 0 0 12 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 78 0 0 0.540 18 0.83
30 91 A 0 3 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.119 3 0.97
31 92 A 0 0 0 0 0 0 8 0 10 0 81 0 0 0 0 0 0 0 0 1 78 0 0 0.659 22 0.60
32 93 A 0 1 0 0 3 0 95 0 0 0 0 0 0 1 0 0 0 0 0 0 78 0 0 0.256 8 0.93
33 94 A 4 4 0 0 0 0 0 31 0 0 40 1 21 0 0 0 0 0 0 0 78 0 0 1.361 45 0.35
34 95 A 0 0 96 0 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 78 0 0 0.188 6 0.91
35 96 A 0 0 0 0 0 0 0 4 0 0 8 0 4 0 83 1 0 0 0 0 78 0 0 0.656 21 0.60
36 97 A 1 4 0 0 0 0 0 0 0 0 0 0 0 0 91 0 4 0 0 0 78 0 0 0.392 13 0.76
37 98 A 1 90 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.369 12 0.94
38 99 A 0 0 76 0 0 0 0 0 0 0 0 9 0 0 14 1 0 0 0 0 78 0 0 0.760 25 0.46
39 100 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 78 0 0 0.000 0 1.00
40 101 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 90 3 0 0 0 58 0 0 0.398 13 0.89
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
32 10 55 1 aDm
33 10 83 1 aDm
40 11 91 3 pAPVv
42 9 43 3 sQTNe
43 9 43 3 sQTNe
44 11 91 3 pAPVv
45 11 75 3 eEETe
46 11 75 3 eEETe
47 10 50 3 pAPVv
48 10 90 3 pAPVv
49 10 33 3 pAPVv
50 10 27 3 pAPVv
51 10 81 3 pAPVv
52 10 46 3 pAPVv
53 10 46 3 pAPVv
54 10 46 3 pAPVv
55 10 59 3 pAPVv
56 10 77 3 pAPVv
57 10 90 3 pAPVv
58 10 46 3 pAPVv
59 10 46 3 pAPVv
60 11 91 3 pAPVv
61 10 81 3 pAPVv
66 10 26 3 pALVe
67 10 59 3 pALVe
73 10 55 3 pALVe
//