Complet list of 1a7m hssp file
Complete list of 1a7m.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1A7M
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-12
HEADER CYTOKINE 16-MAR-98 1A7M
COMPND MOL_ID: 1; MOLECULE: LEUKEMIA INHIBITORY FACTOR; CHAIN: A; SYNONYM: LI
SOURCE MOL_ID: 1; FRAGMENT: RESIDUES 48-81; ORGANISM_SCIENTIFIC: MUS MUSCULUS
AUTHOR M.G.HINDS,T.MAURER,J.-G.ZHANG,N.A.NICOLA,R.S.NORTON
DBREF 1A7M A 1 180 UNP P09056 LIF_MOUSE 24 203
SEQLENGTH 180
NCHAIN 1 chain(s) in 1A7M data set
NALIGN 56
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : LIF_MOUSE 1LKI 0.93 0.99 1 180 24 203 180 0 0 203 P09056 Leukemia inhibitory factor OS=Mus musculus GN=Lif PE=1 SV=1
2 : Q3U1H5_MOUSE 0.93 0.99 1 180 24 203 180 0 0 203 Q3U1H5 Putative uncharacterized protein OS=Mus musculus GN=Lif PE=2 SV=1
3 : Q8CGL0_MESAU 0.93 0.99 1 173 17 189 173 0 0 189 Q8CGL0 Leukemia inhibitory factor (Fragment) OS=Mesocricetus auratus PE=2 SV=1
4 : F8WH42_MOUSE 0.92 0.99 23 180 1 158 158 0 0 158 F8WH42 Leukemia inhibitory factor OS=Mus musculus GN=Lif PE=4 SV=1
5 : O88211_RAT 0.89 0.96 1 180 23 202 180 0 0 202 O88211 Leukemia inhibitory factor (Precursor) OS=Rattus norvegicus GN=Lif PE=2 SV=1
6 : Q64015_9MURI 0.89 0.95 1 180 27 204 180 2 2 204 Q64015 LIF OS=Mus sp. GN=LIF PE=4 SV=1
7 : G3I136_CRIGR 0.88 0.94 23 180 1 158 158 0 0 158 G3I136 Leukemia inhibitory factor OS=Cricetulus griseus GN=I79_017082 PE=4 SV=1
8 : LIF_RAT 0.88 0.96 1 180 23 202 180 0 0 202 P17777 Leukemia inhibitory factor OS=Rattus norvegicus GN=Lif PE=2 SV=1
9 : Q256Y4_MICAR 0.88 0.94 1 180 23 202 180 0 0 202 Q256Y4 Leukemia inhibitor factor (Precursor) OS=Microtus arvalis GN=lif PE=2 SV=1
10 : D2H227_AILME 0.86 0.95 1 180 20 199 180 0 0 199 D2H227 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_003634 PE=4 SV=1
11 : G1LMQ8_AILME 0.86 0.95 1 180 23 202 180 0 0 202 G1LMQ8 Uncharacterized protein OS=Ailuropoda melanoleuca GN=LIF PE=4 SV=1
12 : M3WG09_FELCA 0.86 0.95 1 180 23 202 180 0 0 202 M3WG09 Uncharacterized protein OS=Felis catus GN=LIF PE=4 SV=1
13 : O54938_ONDZI 0.86 0.93 45 180 1 136 136 0 0 136 O54938 Leukemia inhibitory factor (Fragment) OS=Ondatra zibethicus GN=LIF PE=4 SV=1
14 : T2HWM2_FELCA 0.86 0.95 1 174 23 196 174 0 0 196 T2HWM2 Leukemia inhibitory factor (Fragment) OS=Felis catus GN=LIF PE=2 SV=1
15 : G1QTI3_NOMLE 0.85 0.94 1 180 23 202 180 0 0 202 G1QTI3 Uncharacterized protein OS=Nomascus leucogenys GN=LOC100602909 PE=4 SV=1
16 : G3SIT4_GORGO 0.85 0.94 1 180 23 202 180 0 0 202 G3SIT4 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101137862 PE=4 SV=1
17 : G9K872_MUSPF 0.85 0.95 1 179 17 195 179 0 0 195 G9K872 Leukemia inhibitory factor (Fragment) OS=Mustela putorius furo PE=2 SV=1
18 : H2P409_PONAB 0.85 0.94 1 180 23 202 180 0 0 202 H2P409 Uncharacterized protein OS=Pongo abelii GN=LIF PE=4 SV=1
19 : H2QLG8_PANTR 0.85 0.94 1 180 23 202 180 0 0 202 H2QLG8 Leukemia inhibitory factor (Cholinergic differentiation factor) OS=Pan troglodytes GN=LIF PE=2 SV=1
20 : I3M7C1_SPETR 0.85 0.93 1 180 23 202 180 0 0 202 I3M7C1 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=LIF PE=4 SV=1
21 : J9NRL6_CANFA 0.85 0.95 1 180 23 202 180 0 0 202 J9NRL6 Uncharacterized protein OS=Canis familiaris GN=LIF PE=4 SV=1
22 : LIF_HUMAN 2Q7N 0.85 0.94 1 180 23 202 180 0 0 202 P15018 Leukemia inhibitory factor OS=Homo sapiens GN=LIF PE=1 SV=1
23 : M3YP59_MUSPF 0.85 0.95 1 180 23 202 180 0 0 202 M3YP59 Uncharacterized protein OS=Mustela putorius furo GN=LIF PE=4 SV=1
24 : F7GF49_MACMU 0.84 0.93 1 180 23 202 180 0 0 202 F7GF49 Uncharacterized protein OS=Macaca mulatta GN=LIF PE=4 SV=1
25 : G7N3K2_MACMU 0.84 0.93 1 180 20 199 180 0 0 199 G7N3K2 Putative uncharacterized protein (Fragment) OS=Macaca mulatta GN=EGK_02928 PE=4 SV=1
26 : G7PF61_MACFA 0.84 0.93 1 180 16 195 180 0 0 195 G7PF61 Putative uncharacterized protein (Fragment) OS=Macaca fascicularis GN=EGM_02575 PE=4 SV=1
27 : J9NXU0_CANFA 0.84 0.95 23 180 1 158 158 0 0 158 J9NXU0 Uncharacterized protein OS=Canis familiaris GN=LIF PE=4 SV=1
28 : L5L6I6_PTEAL 0.84 0.93 1 180 25 204 180 0 0 204 L5L6I6 Leukemia inhibitory factor OS=Pteropus alecto GN=PAL_GLEAN10007931 PE=4 SV=1
29 : Q9GKZ8_PIG 0.84 0.94 1 180 23 202 180 0 0 202 Q9GKZ8 Leukemia inhibitory factor OS=Sus scrofa GN=LIF PE=2 SV=1
30 : G3QW62_GORGO 0.83 0.92 1 180 23 203 181 1 1 203 G3QW62 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101137862 PE=4 SV=1
31 : H0X810_OTOGA 0.83 0.94 1 180 23 202 180 0 0 202 H0X810 Uncharacterized protein OS=Otolemur garnettii GN=LIF PE=4 SV=1
32 : LIF_NEOVI 0.83 0.94 1 180 23 202 180 0 0 202 O62728 Leukemia inhibitory factor OS=Neovison vison GN=LIF PE=2 SV=1
33 : E5Q8J2_BUBBU 0.82 0.93 1 180 23 202 180 0 0 202 E5Q8J2 Leukemia inhibitory factor (Precursor) OS=Bubalus bubalis GN=LIF PE=2 SV=1
34 : F7GQ12_CALJA 0.82 0.94 1 180 23 202 180 0 0 202 F7GQ12 Uncharacterized protein OS=Callithrix jacchus GN=LIF PE=4 SV=1
35 : H0VDT3_CAVPO 0.82 0.92 1 180 23 202 180 0 0 202 H0VDT3 Uncharacterized protein (Fragment) OS=Cavia porcellus GN=LOC100713602 PE=4 SV=1
36 : L8J4M8_9CETA 0.81 0.93 1 180 25 204 180 0 0 204 L8J4M8 Leukemia inhibitory factor OS=Bos mutus GN=M91_07608 PE=4 SV=1
37 : LIF_BOVIN 0.81 0.93 1 180 23 202 180 0 0 202 Q27956 Leukemia inhibitory factor OS=Bos taurus GN=LIF PE=2 SV=1
38 : L9KUF1_TUPCH 0.80 0.91 1 180 64 246 183 1 3 246 L9KUF1 Leukemia inhibitory factor OS=Tupaia chinensis GN=TREES_T100016984 PE=4 SV=1
39 : U3KLT1_RABIT 0.79 0.91 1 180 24 203 180 0 0 203 U3KLT1 Uncharacterized protein OS=Oryctolagus cuniculus GN=LIF PE=4 SV=1
40 : Q7M363_SHEEP 0.78 0.91 1 180 23 202 180 0 0 202 Q7M363 Leukemia inhibitory factor (Precursor) OS=Ovis aries PE=4 SV=1
41 : G5APV6_HETGA 0.77 0.93 4 180 24 200 177 0 0 200 G5APV6 Leukemia inhibitory factor OS=Heterocephalus glaber GN=GW7_05299 PE=4 SV=1
42 : L5M1D9_MYODS 0.76 0.91 23 180 1 158 158 0 0 158 L5M1D9 Leukemia inhibitory factor OS=Myotis davidii GN=MDA_GLEAN10018519 PE=4 SV=1
43 : G3T8T3_LOXAF 0.75 0.88 1 180 23 201 180 1 1 201 G3T8T3 Uncharacterized protein OS=Loxodonta africana GN=LOC100659089 PE=4 SV=1
44 : F7EE29_MONDO 0.71 0.81 1 180 23 202 180 0 0 202 F7EE29 Uncharacterized protein OS=Monodelphis domestica GN=LIF PE=4 SV=2
45 : G3W6D1_SARHA 0.68 0.82 1 180 23 202 180 0 0 202 G3W6D1 Uncharacterized protein OS=Sarcophilus harrisii GN=LIF PE=4 SV=1
46 : Q9GLC2_TRIVU 0.67 0.81 1 180 2 181 180 0 0 181 Q9GLC2 Leukemia inhibitory factor (Fragment) OS=Trichosurus vulpecula GN=LIF PE=2 SV=1
47 : G3TPT5_LOXAF 0.60 0.81 1 180 21 201 181 1 1 201 G3TPT5 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=LOC100655202 PE=4 SV=1
48 : F7EY27_ORNAN 0.55 0.81 1 180 23 201 180 1 1 201 F7EY27 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus GN=LIF PE=4 SV=1
49 : G3UEN1_LOXAF 0.50 0.73 1 180 23 201 180 1 1 201 G3UEN1 Uncharacterized protein (Fragment) OS=Loxodonta africana PE=4 SV=1
50 : G3ULJ2_LOXAF 0.50 0.71 1 180 23 202 180 0 0 202 G3ULJ2 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=LOC100663082 PE=4 SV=1
51 : H0ZJU7_TAEGU 0.42 0.65 18 180 1 165 165 1 2 165 H0ZJU7 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=LIF PE=4 SV=1
52 : M7BH72_CHEMY 0.42 0.64 1 180 247 428 182 1 2 435 M7BH72 Leukemia inhibitory factor OS=Chelonia mydas GN=UY3_15329 PE=4 SV=1
53 : U3JWX5_FICAL 0.42 0.64 18 180 1 165 165 1 2 165 U3JWX5 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=LIF PE=4 SV=1
54 : F1N9H9_CHICK 0.40 0.64 2 180 49 232 184 2 5 239 F1N9H9 Uncharacterized protein OS=Gallus gallus GN=LIF PE=4 SV=2
55 : H9H0T0_MELGA 0.39 0.63 2 180 21 204 184 2 5 204 H9H0T0 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=LIF PE=4 SV=1
56 : F7B044_XENTR 0.31 0.63 1 173 23 196 177 4 7 203 F7B044 Uncharacterized protein OS=Xenopus tropicalis GN=lif PE=4 SV=1
## ALIGNMENTS 1 - 56
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 159 47 34 SSS SS SSSSS SSSTSSSSSTSSS SSSSTSSSSSNSS SSSSNTSS K T
2 2 A P - 0 0 115 49 12 PPP PP PPPPP PPPPPPPPPPPPP PPPPPPPPPPPPP PPPPPPPP A PPA
3 3 A L - 0 0 123 49 9 LLL LL LLLLL LLLLLLLLLLLLL LLLLLLLLLLLLL LLLLLLLL L VVM
4 4 A P + 0 0 129 50 26 PPP PP PPPPP PPPPPPPPPPPPP PSPPPPPPPPPPPP PPPPPPCC P SAP
5 5 A I + 0 0 79 50 50 III II IIIII IIIIIIIIIIIII IIIIIIIIIIIIIL IIIINVNN V GGL
6 6 A T + 0 0 129 50 39 TTT TT TTTTT TTTTTTTTTTTTT TTTTTTTTTTTNNP TTTTTTTT N RRD
7 7 A P S S+ 0 0 51 50 34 PPP PP PPPPP PPPPPPPPPPPPP PPPPPPPPPPPPPS PPPPPPPP T AAF
8 8 A V + 0 0 49 50 65 VVV VV VVVVV VVVVVVIVVVVVV VVVVVVVVVVVVVV DDDDDTDD P LLK
9 9 A N S S- 0 0 143 50 45 NNN NN NNNNN NNNNNNNNNNNNN NNNNNNNNNNnNNN NDDDKNNN S llG
10 10 A A S S- 0 0 40 50 39 AAA AA AAAAA AAAAAAAAAAAAA AAATAAAAAAaAAA APPPASAA P ssN
11 11 A T S >> S+ 0 0 35 50 54 TTT TT TTTTT TTTTTTTTTTTTT TTTTTTTTTTTTTT TKKKTMPP M AAI
12 12 A a T 34 S+ 0 0 36 50 0 CCC CC CCCCC CCCCCCCCCCCCC CCCCCCCCCCCCCC CCCCCCCC C CCC
13 13 A A T 34 S+ 0 0 38 50 58 AAA AA AAAAA AAAAAAAAAAAAA VAATAAAAAAANNA TEEEIAVV E PPS
14 14 A I T <4 S+ 0 0 118 50 68 III II ITTTT TIITIITTITIII TTITTTITTTTTTT TMMMTNLL N TTN
15 15 A R S < S- 0 0 53 50 51 RRR RR RRRRR RRRRRRRRRRRRR RRRRRRRRRRRHHR RRRRDRDD M NNS
16 16 A H - 0 0 82 50 30 HHH HH HHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHH HHHHHHHH N GGN
17 17 A P - 0 0 115 50 56 PPP PP PPPPP PPPPPPPPPPPPP PPPPPPPPPPPPPQ PQQQPLPP L LLD
18 18 A b - 0 0 43 52 0 CCC CC CCCCC CCCCCCCCCCCCC CCCCCCCCCCCCCC CCCCCCCCCCCCCC
19 19 A H - 0 0 93 52 66 HHH HH HHHHH HHHHHHHHHHHHH HHHHHPHPPPYPPH PPPPAQDARKRRRN
20 20 A G S S- 0 0 84 51 55 GGG GG GGSSS SNNSNNSSNSNNN NSNSSSNSSSNSSS SGGGS.SSSPSAAD
21 21 A N - 0 0 70 52 2 NNN NN NNNNN NNNNNNNNNNNNN NNNNNNNNNNNNNS NNNNNNNNNNNNNn
22 22 A L S >>>S+ 0 0 38 52 27 LLL LL LLLLL LLLLLLLLLLLLL LLLLLLLVLLLLLV LLLLLVIIVVVVVi
23 23 A M H 3>5S+ 0 0 134 56 50 MMMMMMMMMMMM MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMTTTMTMMQVQLQW
24 24 A N H 3>5S+ 0 0 94 56 68 NNNNNNSNNNNN NNNNNNNNNNNNNNNNNNNNNSNNSSSSSTFFFTHTTEEEEEH
25 25 A Q H <>5S+ 0 0 77 56 0 QQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
26 26 A I H X5S+ 0 0 2 56 28 IIIIIIIIIIII IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIITTTTTI
27 27 A K H XX S+ 0 0 0 56 19 LLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLVVVVVI
31 31 A A H 3X S+ 0 0 45 56 44 AAAAAAAAAAAA AAAAAALAAAAAAAAAAAAGAAGGGAAAVLNNNENGAAVAAAT
32 32 A Q H 3< S+ 0 0 140 56 41 QQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQLLVLLE
33 33 A L H XX S+ 0 0 3 56 1 LLLLLLLLLLLL LLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLLLLLLLLLL
34 34 A N H >X S+ 0 0 45 56 7 NNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
35 35 A G H 3X S+ 0 0 50 56 48 GGGGGGGGGGGG GGGGGGGGGGGGGGSSGSGSGSSSSGGSSSNSSSSSRAAAAAS
36 36 A S H <>>S+ 0 0 25 56 33 SSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSTTSSSSSSSSSSTTTTTG
37 37 A A H <<5S+ 0 0 0 56 0 AAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
38 38 A N H X5S+ 0 0 86 56 50 NNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNSQPPNQNKQPQQQR
39 39 A A H X5S+ 0 0 41 56 56 AAAAAAAAAAAA AAAAAAAAAAAAAAAAAAASAASSAAAAAAEEETGDDEDEDDH
40 40 A L H X5S+ 0 0 0 56 3 LLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLLVLLLLLLL
41 41 A F H >X S+ 0 0 0 56 0 YYYYYYYYYYYY YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFYYYYYY
45 45 A Y H >X S+ 0 0 21 57 54 YYYYYTYYYYYYYYYYYYYYYYYYYYYYYLYYYYYYYYYYYYTYYYYYMSLLLLLT
46 46 A T H >< S+ 0 0 66 57 54 TTTTTATTTTTTTTTTTTTTTTTTTTTTTrTTTTTTTTTTTTAKKKTTGKKDKKKE
47 47 A A H <4 S+ 0 0 8 54 41 AAAAAQAAAAAAAAAAAAAAAAAAAAAAAwAAAAAAAAAAAA.AAAAT.ACCCCC.
48 48 A Q H << S- 0 0 8 56 3 QQQQQGQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ.
49 49 A G << - 0 0 26 57 9 GGGGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGV
50 50 A E S S+ 0 0 129 56 20 EEEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDNEEQKEDEEEQ
51 51 A P S S+ 0 0 37 57 6 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPG
52 52 A F S > S+ 0 0 0 57 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFL
53 53 A P T 4 S+ 0 0 87 56 49 PPPPP.PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQQQHQSPSSSSSS
54 54 A N T 4 S+ 0 0 131 57 56 NNNNNPNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSTTTKSSSSSSSSD
55 55 A N T >> S+ 0 0 42 57 38 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEKDDEHEEEK
56 56 A L H >X S+ 0 0 22 57 57 VVVVVVVVLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLEHVMSLSSSV
57 57 A D H 34 S+ 0 0 111 57 14 EEEEDEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDRDDDDDD
58 58 A K H <4 S+ 0 0 132 57 23 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKHKKEKRRQ
59 59 A L H << S+ 0 0 5 57 7 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMILLLLLI
60 60 A c S < S- 0 0 0 57 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
61 61 A G > - 0 0 22 57 52 AAAAAAGAGGGGGGGGGGGAGGGGGGGGGGGGSGASSGGGAGGNNNgAGSNNNSTD
62 62 A P T 3 + 0 0 24 57 19 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPqPHHPAPPPP
63 63 A N T 3 S- 0 0 101 57 44 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATASSV
64 64 A V X + 0 0 83 57 54 MMMMMMMMMVVVMVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVLFGTGGGI
65 65 A T T 3 S- 0 0 32 57 38 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTMIITIIIV
66 66 A D T 3 S+ 0 0 134 57 61 DDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDDDDDDDDDDDDDDDNDSKFDFFFH
67 67 A F S < S- 0 0 17 57 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
68 68 A P - 0 0 27 57 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
69 69 A P - 0 0 81 57 38 SSSSPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAPTPPPPPPPAAAPAK
70 70 A F - 0 0 13 57 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
71 71 A H - 0 0 133 57 19 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQHHHHHHHHHHRQRHHN
72 72 A A + 0 0 48 57 47 GGGGAGAAAAAAAAAAAAAAAAAAAAAAAAPRAAAAAAAPAPAAAATPAAVVVVVA
73 73 A N - 0 0 134 57 13 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNNNSNNnnnnnt
74 74 A G S S+ 0 0 70 57 33 GGGGGGGGGGGGGGGGGGGGSGGGGGSGGGGGGGGGGGGGGGGGGGGRGGssstts
75 75 A T > - 0 0 57 57 46 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTQITEHEEES
76 76 A E H > S+ 0 0 123 57 39 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDGEKEERKRRRE
77 77 A K H > S+ 0 0 67 57 4 KKKKKKKKKRRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKK
78 78 A A H > S+ 0 0 20 57 67 TTTTTTTTTTTTTTAATAAATATAAATAAAATAAVAAAVVAADDEEDEEDEEEEEE
79 79 A K H X S+ 0 0 53 57 53 KKKKKKKKKRRRKRKKRKKKRKRKKKRRRKKRRRKRRRRRKRKKKKKRKKVIVVVK
80 80 A L H X S+ 0 0 11 57 14 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLLMMMMMA
81 81 A V H X S+ 0 0 7 57 3 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVI
82 82 A E H X S+ 0 0 41 57 27 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEAAAAAE
83 83 A L H X S+ 0 0 0 57 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLMLMMML
84 84 A Y H >X S+ 0 0 18 57 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHYYYYYF
85 85 A R H 3X S+ 0 0 57 57 31 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQRRSKKKKKS
86 86 A M H 3X S+ 0 0 1 57 28 MMMMMMMMMLLIMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILVLLLI
87 87 A V H X S+ 0 0 82 57 10 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNDDNNNNNN
97 97 A I H 3X>S+ 0 0 0 57 8 IIIIIIVIVIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVTIIIIIII
98 98 A T H 3X5S+ 0 0 13 57 15 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTISLTTTTTTT
99 99 A R H > S+ 0 0 71 57 81 TTTTTTDTNNNNNNSSNSSNNSNSSSNNGSNNYSNYYNTTNHKGGSEGNKMTMMTK
108 108 A A H 3> S+ 0 0 0 57 23 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAADAAADADDAAAAAK
109 109 A V H 3X S+ 0 0 61 57 83 VVVVVVVVQLLLLLLLLLLFLLLLLLLLVLLLHLLHHLHHLAQQLLRLQQKKKKKT
110 110 A S H <> S+ 0 0 77 57 55 SSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSGSSGGSSSSGNSPPNSNNEEEEEP
111 111 A L H X S+ 0 0 5 57 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
112 112 A H H X S+ 0 0 19 57 65 QQQQQQHQHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHILLHRHHLLLLLL
113 113 A S H X S+ 0 0 60 57 58 VVVVIVGISSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSSEEENDN
114 114 A K H X S+ 0 0 79 57 32 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRQNKKRRRRRE
115 115 A L H X S+ 0 0 0 57 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
116 116 A N H X S+ 0 0 65 57 51 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNSSSNNNSNSNNNDTKKHHHHHE
117 117 A A H X>S+ 0 0 45 57 65 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTVTTAAAAASMTMSVSSNNNNNK
118 118 A T H X5S+ 0 0 6 57 4 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTITTTTTTTTT
119 119 A I H X5S+ 0 0 15 57 70 IIIITIITIAAAIAAAAAAAAAAAAAATAAAAAAAAAAAAAAATTTVTMMTTTTTF
120 120 A D H X5S+ 0 0 85 57 45 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDAAADADDKKKKKS
121 121 A V H X5S+ 0 0 48 57 54 VVVVVVTVIIIIIIIIIIIVIIIIIIITSIVIVIVVVITTVTTMIITIIITTTTTG
122 122 A M H XX S+ 0 0 1 57 26 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLLLVLVMLLLLLL
130 130 A L H 3< S+ 0 0 1 57 67 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLQLLLHLLHLLHHLTTTFTLLTTTTTS
131 131 A b H 3< S+ 0 0 16 57 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
132 132 A R H << S+ 0 0 112 57 57 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHQRRLLLLLF
133 133 A L < + 0 0 0 57 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
134 134 A a S S- 0 0 0 57 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
135 135 A N S S- 0 0 32 57 60 NNNNNNNNNNNNNNSSNSSNSSNSSSSSNSSNSSNSSSSSNSNRRRNNSSKNKKKK
136 136 A K S S- 0 0 101 57 34 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKERKGNKNHHK
137 137 A Y S S+ 0 0 68 57 12 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFNHYYYYYY
138 138 A R S S+ 0 0 157 57 43 RRRRHRHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQQNNNNNNNH
139 139 A V S S- 0 0 35 57 14 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVMMIVIIIV
140 140 A G S S- 0 0 1 57 79 GGGGGGGGGAAAGAGGAGGAAGAGGGAAAGAASAASSAAAAASAAAGFRRFSFFFT
141 141 A H - 0 0 26 57 32 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHRHHHHQHLPQQQQQH
142 142 A V - 0 0 24 57 10 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVTTVVVVVV
143 143 A D - 0 0 87 57 18 DDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDDDEDSSSDDDDDDDDDS
144 144 A V - 0 0 41 57 11 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVTPVVVVVV
145 145 A P - 0 0 91 57 76 PPPPPPTPTAAATATTATTTATATTTAAATTATTTTTTAAAASSSSYTIIRTRSSH
146 146 A P + 0 0 102 57 39 PPPPCPYCYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYSYYYYYY
147 147 A V + 0 0 125 57 28 VVVVVVGVAGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGGGGGGGG
148 148 A P + 0 0 71 57 48 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSLLDKDEEP
149 149 A D - 0 0 105 56 46 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDYYNDSSSSS.
150 150 A H > + 0 0 20 57 65 HHHHNHTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSIISSSSSP
151 151 A S T 3 + 0 0 76 57 50 SSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSAASRSSKKKKKL
152 152 A D T 3 S+ 0 0 97 57 48 DDDDSDSSSGGGSGGGGGGGGGGGGGGGGGGGGGDGGGGGGDGTNNAEQQGGGDGP
153 153 A K S <> S- 0 0 79 57 18 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKMKKKS
154 154 A E H > S+ 0 0 162 57 39 EEEEEEDEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDSNSSSG
155 155 A V H > S+ 0 0 85 57 65 AAAAAAVAAVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVTTTIQVWAVAAAK
156 156 A F H > S+ 0 0 68 57 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFL
157 157 A Q H X S+ 0 0 52 57 41 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKEHHKKKKKP
158 158 A K H < S+ 0 0 110 57 16 RRRRRRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQ
159 159 A K H < S+ 0 0 45 57 2 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKK
160 160 A K H X S+ 0 0 2 57 32 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQQQQQA
161 161 A L T < S+ 0 0 22 57 43 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLLQQQQQH
162 162 A G T >> S+ 0 0 0 57 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
163 163 A c H 3> S+ 0 0 0 57 3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCC
164 164 A Q H 3X S+ 0 0 12 57 18 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHHQQEEQQQQQK
165 165 A L H <>>S+ 0 0 2 57 18 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVVVVV
166 166 A L H X5S+ 0 0 1 57 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
167 167 A G H X5S+ 0 0 0 57 60 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGLIRRRRRK
168 168 A T H X5S+ 0 0 0 57 31 TTTTTTTTTKKKTKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKK
169 169 A Y H X5S+ 0 0 1 57 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
170 170 A K H XX S+ 0 0 11 57 23 VVVVVVVVVVVVVVIIVIIVVIVTTTVVVIVVVIVVVVVVVLVVVVVVLLVVVVVF
173 173 A I H 3X S+ 0 0 0 57 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMMIIIIIIIIIIIVIIII
174 174 A S H 3< S+ 0 0 30 55 46 SS SSSSSSAAASAAAAAAGAAAAAAAASAAAAGGAAAAAGAASSSAAPPGSGAA
175 175 A V H <4 S+ 0 0 61 54 64 VV VAVVVMVVVV VVVVVVVVVVVVVVVVVVVMVVVVVVVLEVQLEKYVLQQQQ
176 176 A V H >X S+ 0 0 0 54 50 VV VVVVLVVVVV LLVLLVVLVLLLVVLLVVLLVLLLLLVLLVVVLVLLAAAAA
177 177 A V T 3< S+ 0 0 14 54 33 VV VVVAAAAAAA AAAAAAAAAAAAAAAAAAAATAAAAATAVAAAAVAAAVAAA
178 178 A Q T 34 S+ 0 0 162 54 37 QQ QQQQQQQQQQ QQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQWRRHRRR
179 179 A A T <4 0 0 12 54 49 AA AAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAASAAAAADGDDVVVVV
180 180 A F < 0 0 18 53 8 FF FFFFFFFFFF FF FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFFLLLLL
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 83 11 0 0 0 2 0 0 4 0 47 0 0 0.609 20 0.65
2 2 A 0 0 0 0 0 0 0 0 4 96 0 0 0 0 0 0 0 0 0 0 49 0 0 0.171 5 0.88
3 3 A 4 94 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.269 8 0.91
4 4 A 0 0 0 0 0 0 0 0 2 90 4 0 4 0 0 0 0 0 0 0 50 0 0 0.431 14 0.74
5 5 A 4 4 82 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 6 0 50 0 0 0.718 23 0.49
6 6 A 0 0 0 0 0 0 0 0 0 2 0 86 0 0 4 0 0 0 6 2 50 0 0 0.584 19 0.61
7 7 A 0 0 0 0 2 0 0 0 4 90 2 2 0 0 0 0 0 0 0 0 50 0 0 0.458 15 0.66
8 8 A 74 4 2 0 0 0 0 0 0 2 0 2 0 0 0 2 0 0 0 14 50 0 0 0.940 31 0.34
9 9 A 0 4 0 0 0 0 0 2 0 0 2 0 0 0 0 2 0 0 84 6 50 0 3 0.679 22 0.55
10 10 A 0 0 0 0 0 0 0 0 82 8 6 2 0 0 0 0 0 0 2 0 50 0 0 0.690 23 0.61
11 11 A 0 0 2 4 0 0 0 0 4 4 0 80 0 0 0 6 0 0 0 0 50 0 0 0.812 27 0.45
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 50 0 0 0.000 0 1.00
13 13 A 6 0 2 0 0 0 0 0 70 4 2 4 0 0 0 0 0 8 4 0 50 0 0 1.163 38 0.41
14 14 A 0 4 34 6 0 0 0 0 0 0 0 50 0 0 0 0 0 0 6 0 50 0 0 1.180 39 0.32
15 15 A 0 0 0 2 0 0 0 0 0 0 2 0 0 4 82 0 0 0 4 6 50 0 0 0.746 24 0.48
16 16 A 0 0 0 0 0 0 0 4 0 0 0 0 0 92 0 0 0 0 4 0 50 0 0 0.334 11 0.70
17 17 A 0 8 0 0 0 0 0 0 0 82 0 0 0 0 0 0 8 0 0 2 50 0 0 0.645 21 0.44
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 52 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 2 0 4 19 0 0 0 60 8 2 2 0 2 2 52 1 0 1.328 44 0.33
20 20 A 0 0 0 0 0 0 0 22 4 2 47 0 0 0 0 0 0 0 24 2 51 0 0 1.307 43 0.45
21 21 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 52 0 1 0.095 3 0.97
22 22 A 15 79 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 0 0.640 21 0.73
23 23 A 2 2 0 82 0 2 0 0 0 0 0 7 0 0 0 0 5 0 0 0 56 0 0 0.723 24 0.50
24 24 A 0 0 0 0 5 0 0 0 0 0 13 7 0 4 0 0 0 9 63 0 56 0 0 1.234 41 0.32
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 56 0 0 0.000 0 1.00
26 26 A 0 0 91 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 56 0 0 0.301 10 0.71
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 77 21 0 0 0 0 56 0 0 0.605 20 0.78
28 28 A 0 0 0 0 0 0 0 0 0 0 30 0 0 0 7 2 0 0 61 0 56 0 0 0.925 30 0.45
29 29 A 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 96 0 0 0 56 0 0 0.179 5 0.86
30 30 A 9 88 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0.476 15 0.80
31 31 A 4 4 0 0 0 0 0 9 73 0 0 2 0 0 0 0 0 2 7 0 56 0 0 1.014 33 0.56
32 32 A 2 7 0 0 0 0 0 0 0 0 0 0 0 2 0 0 88 2 0 0 56 0 0 0.521 17 0.59
33 33 A 2 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0.090 2 0.99
34 34 A 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 98 0 56 0 0 0.090 2 0.93
35 35 A 0 0 0 0 0 0 0 57 9 0 30 0 0 0 2 0 0 0 2 0 56 0 0 1.041 34 0.51
36 36 A 0 0 0 0 0 0 0 2 0 0 86 13 0 0 0 0 0 0 0 0 56 0 0 0.464 15 0.66
37 37 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 0 0 5 2 0 0 0 2 2 11 0 79 0 56 0 0 0.801 26 0.49
39 39 A 0 0 0 0 0 0 0 2 71 0 5 2 0 2 0 0 0 9 0 9 56 0 0 1.044 34 0.43
40 40 A 2 96 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0.179 5 0.96
41 41 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0.090 2 0.99
42 42 A 4 0 80 0 0 0 0 0 0 0 9 5 0 0 0 0 0 2 0 0 56 0 0 0.739 24 0.45
43 43 A 0 68 2 0 0 0 5 0 5 0 18 0 0 0 0 2 0 0 0 0 56 0 0 1.028 34 0.32
44 44 A 0 0 0 0 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0.090 2 1.00
45 45 A 0 11 0 2 0 0 81 0 0 0 2 5 0 0 0 0 0 0 0 0 57 0 0 0.707 23 0.45
46 46 A 0 0 0 0 0 0 0 2 4 0 0 75 0 0 2 14 0 2 0 2 57 3 1 0.889 29 0.45
47 47 A 0 0 0 0 0 2 0 0 85 0 0 2 9 0 0 0 2 0 0 0 54 0 0 0.579 19 0.59
48 48 A 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 98 0 0 0 56 0 0 0.090 2 0.97
49 49 A 2 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 0 2 0 0 57 1 0 0.176 5 0.90
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 86 2 7 56 0 0 0.583 19 0.79
51 51 A 0 0 0 0 0 0 0 2 0 98 0 0 0 0 0 0 0 0 0 0 57 0 0 0.088 2 0.93
52 52 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 1 0 0.088 2 0.98
53 53 A 0 0 0 0 0 0 0 0 0 79 13 0 0 2 0 0 7 0 0 0 56 0 0 0.710 23 0.51
54 54 A 0 0 0 0 0 0 0 0 0 2 19 5 0 0 0 2 0 0 70 2 57 0 0 0.934 31 0.44
55 55 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 4 0 9 82 4 57 0 0 0.679 22 0.61
56 56 A 19 68 0 2 0 0 0 0 0 0 7 0 0 2 0 0 0 2 0 0 57 0 0 0.976 32 0.42
57 57 A 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 9 0 88 57 0 0 0.470 15 0.85
58 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 91 2 2 0 0 57 0 0 0.414 13 0.77
59 59 A 0 95 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.240 8 0.92
60 60 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
61 61 A 0 0 0 0 0 0 0 58 19 0 9 2 0 0 0 0 0 0 11 2 57 0 1 1.226 40 0.48
62 62 A 0 0 0 0 0 0 0 0 2 93 0 0 0 4 0 0 2 0 0 0 57 0 0 0.327 10 0.81
63 63 A 2 0 0 0 0 0 0 4 4 0 4 2 0 0 0 0 0 0 86 0 57 0 0 0.624 20 0.55
64 64 A 67 4 2 18 2 0 0 7 0 0 0 2 0 0 0 0 0 0 0 0 57 0 0 1.092 36 0.46
65 65 A 2 0 9 2 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 0 57 0 0 0.470 15 0.61
66 66 A 0 0 0 0 7 0 0 0 0 0 2 0 0 2 0 2 0 0 4 84 57 0 0 0.661 22 0.39
67 67 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
68 68 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
69 69 A 0 0 0 0 0 0 0 0 9 79 9 2 0 0 0 2 0 0 0 0 57 0 0 0.755 25 0.61
70 70 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
71 71 A 0 0 0 0 0 0 0 0 0 0 0 0 0 91 4 0 4 0 2 0 57 0 0 0.390 13 0.81
72 72 A 9 0 0 0 0 0 0 9 72 7 0 2 0 0 2 0 0 0 0 0 57 0 0 0.992 33 0.52
73 73 A 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 95 2 57 0 6 0.264 8 0.87
74 74 A 0 0 0 0 0 0 0 84 0 0 11 4 0 0 2 0 0 0 0 0 57 0 0 0.570 19 0.67
75 75 A 0 0 2 0 0 0 0 0 0 0 2 86 0 2 0 0 2 7 0 0 57 0 0 0.600 20 0.54
76 76 A 0 0 0 0 0 0 0 2 0 0 0 0 0 0 7 4 0 86 0 2 57 0 0 0.576 19 0.61
77 77 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 95 0 0 0 0 57 0 0 0.206 6 0.95
78 78 A 5 0 0 0 0 0 0 0 37 0 0 33 0 0 0 0 0 18 0 7 57 0 0 1.381 46 0.32
79 79 A 7 0 2 0 0 0 0 0 0 0 0 0 0 0 35 56 0 0 0 0 57 0 0 0.949 31 0.47
80 80 A 0 88 0 9 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.470 15 0.85
81 81 A 96 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.152 5 0.96
82 82 A 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 89 0 2 57 0 0 0.384 12 0.73
83 83 A 0 91 2 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.341 11 0.94
84 84 A 0 0 0 0 2 0 96 0 0 0 0 0 0 2 0 0 0 0 0 0 57 0 0 0.176 5 0.94
85 85 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 86 9 2 0 0 0 57 0 0 0.532 17 0.69
86 86 A 2 11 68 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.885 29 0.71
87 87 A 44 0 42 2 11 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 57 0 0 1.105 36 0.56
88 88 A 23 0 0 0 0 0 0 0 74 0 2 2 0 0 0 0 0 0 0 0 57 0 0 0.704 23 0.61
89 89 A 0 0 0 0 11 0 89 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.336 11 0.97
90 90 A 2 91 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.381 12 0.92
91 91 A 2 0 0 0 0 0 0 61 0 0 18 0 0 0 0 0 0 0 18 2 57 0 0 1.052 35 0.44
92 92 A 4 0 0 0 4 0 0 0 65 0 2 26 0 0 0 0 0 0 0 0 57 0 0 0.938 31 0.53
93 93 A 0 0 0 0 4 0 0 0 9 0 88 0 0 0 0 0 0 0 0 0 57 0 0 0.446 14 0.80
94 94 A 0 98 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 57 0 0 0.088 2 0.95
95 95 A 0 0 0 0 0 0 0 79 0 0 4 14 0 0 0 0 0 0 0 4 57 0 0 0.697 23 0.69
96 96 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 95 4 57 0 0 0.240 8 0.89
97 97 A 5 0 93 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 57 0 0 0.294 9 0.92
98 98 A 0 2 2 0 0 0 0 0 0 0 2 95 0 0 0 0 0 0 0 0 57 0 0 0.264 8 0.85
99 99 A 0 2 0 0 0 4 0 0 0 0 0 0 0 2 84 4 4 0 2 0 57 0 0 0.710 23 0.72
100 100 A 0 2 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 2 0 93 57 0 0 0.327 10 0.68
101 101 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 57 0 0 0.000 0 1.00
102 102 A 0 0 0 0 0 0 0 0 2 0 0 0 0 0 9 79 0 9 2 0 57 0 0 0.755 25 0.58
103 103 A 33 5 23 0 0 0 0 0 7 0 2 14 0 0 2 2 0 9 4 0 57 0 0 1.864 62 0.17
104 104 A 0 96 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.176 5 0.95
105 105 A 0 0 2 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 95 0 57 0 0 0.264 8 0.79
106 106 A 0 0 0 0 0 0 0 0 0 96 2 0 0 0 2 0 0 0 0 0 57 0 0 0.176 5 0.89
107 107 A 0 0 0 5 0 0 5 7 0 0 21 19 0 2 0 5 0 2 32 2 57 0 0 1.874 62 0.18
108 108 A 0 0 0 0 0 0 0 0 91 0 0 0 0 0 0 2 0 0 0 7 57 0 0 0.341 11 0.76
109 109 A 18 49 0 0 2 0 0 0 2 0 0 2 0 9 2 9 9 0 0 0 57 0 0 1.579 52 0.17
110 110 A 0 0 0 0 0 0 0 7 0 5 70 0 0 0 0 0 0 9 9 0 57 0 0 1.017 33 0.44
111 111 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
112 112 A 0 14 2 0 0 0 0 0 0 0 0 0 0 70 2 0 12 0 0 0 57 0 0 0.924 30 0.34
113 113 A 9 0 4 0 0 0 0 4 0 0 74 0 0 0 0 0 0 5 4 2 57 0 0 1.017 33 0.42
114 114 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 81 2 2 2 0 57 0 0 0.661 22 0.67
115 115 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
116 116 A 0 0 0 0 0 0 0 0 0 0 9 2 0 9 0 5 0 2 72 2 57 0 0 1.032 34 0.49
117 117 A 4 0 0 4 0 0 0 0 67 0 7 9 0 0 0 2 0 0 9 0 57 0 0 1.190 39 0.34
118 118 A 0 0 2 0 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 0 57 0 0 0.088 2 0.96
119 119 A 2 0 16 4 2 0 0 0 56 0 0 21 0 0 0 0 0 0 0 0 57 0 0 1.203 40 0.30
120 120 A 0 0 0 0 0 0 0 0 7 0 2 0 0 0 0 9 0 0 0 82 57 0 0 0.630 21 0.55
121 121 A 26 0 47 2 0 0 0 2 0 0 2 21 0 0 0 0 0 0 0 0 57 0 0 1.246 41 0.45
122 122 A 2 40 0 49 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 57 0 0 1.000 33 0.58
123 123 A 0 0 0 0 0 0 0 0 2 2 0 0 0 0 93 2 0 2 0 0 57 0 0 0.351 11 0.79
124 124 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
125 125 A 2 96 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.176 5 0.95
126 126 A 0 89 9 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 57 0 0 0.384 12 0.77
127 127 A 0 0 0 0 0 0 0 0 0 0 93 0 0 0 0 0 0 0 7 0 57 0 0 0.254 8 0.86
128 128 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 57 0 0 0.088 2 0.97
129 129 A 81 18 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.549 18 0.74
130 130 A 0 72 0 0 2 0 0 0 0 0 2 16 0 7 0 0 2 0 0 0 57 0 0 0.928 30 0.32
131 131 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
132 132 A 0 9 0 0 2 0 0 0 0 0 0 0 0 2 86 0 2 0 0 0 57 0 0 0.556 18 0.43
133 133 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
134 134 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
135 135 A 0 0 0 0 0 0 0 0 0 0 40 0 0 0 5 9 0 0 46 0 57 0 0 1.093 36 0.40
136 136 A 0 0 0 0 0 0 0 2 0 0 0 0 0 4 2 88 0 2 4 0 57 0 0 0.563 18 0.66
137 137 A 0 0 0 0 2 0 95 0 0 0 0 0 0 2 0 0 0 0 2 0 57 0 0 0.264 8 0.88
138 138 A 0 0 0 0 0 0 0 0 0 0 0 0 0 74 11 0 4 0 12 0 57 0 0 0.837 27 0.56
139 139 A 89 0 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.403 13 0.86
140 140 A 0 0 0 0 9 0 0 37 40 0 9 2 0 0 4 0 0 0 0 0 57 0 0 1.350 45 0.20
141 141 A 0 2 0 0 0 0 0 0 0 2 0 0 0 84 2 0 11 0 0 0 57 0 0 0.594 19 0.67
142 142 A 96 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 57 0 0 0.152 5 0.89
143 143 A 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 4 0 89 57 0 0 0.403 13 0.81
144 144 A 96 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 57 0 0 0.176 5 0.89
145 145 A 0 0 4 0 0 0 2 0 26 14 11 39 0 2 4 0 0 0 0 0 57 0 0 1.608 53 0.23
146 146 A 0 0 0 0 0 0 84 0 0 11 2 0 4 0 0 0 0 0 0 0 57 0 0 0.570 19 0.61
147 147 A 14 0 0 0 0 0 0 81 4 0 2 0 0 0 0 0 0 0 0 0 57 0 0 0.637 21 0.72
148 148 A 0 4 0 0 0 0 0 0 0 86 2 0 0 0 0 2 0 4 0 4 57 1 0 0.624 20 0.52
149 149 A 0 0 0 0 0 0 4 0 0 0 9 0 0 0 0 0 0 0 2 86 56 0 0 0.539 17 0.53
150 150 A 0 0 4 0 0 0 0 0 0 2 11 70 0 11 0 0 0 0 4 0 57 0 0 1.029 34 0.35
151 151 A 0 2 0 0 0 0 0 0 4 0 81 4 0 0 2 9 0 0 0 0 57 0 0 0.763 25 0.49
152 152 A 0 0 0 0 0 0 0 61 2 2 9 2 0 0 0 0 4 2 4 16 57 0 0 1.323 44 0.51
153 153 A 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 95 0 2 0 0 57 0 0 0.264 8 0.82
154 154 A 0 0 0 0 0 0 0 2 0 0 7 0 0 0 0 0 0 14 4 74 57 0 0 0.876 29 0.60
155 155 A 67 0 2 0 0 2 0 0 21 0 0 5 0 0 0 2 2 0 0 0 57 0 0 1.037 34 0.34
156 156 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.088 2 0.98
157 157 A 0 0 0 0 0 0 0 0 0 2 0 0 0 4 0 11 82 2 0 0 57 0 0 0.655 21 0.58
158 158 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 86 2 0 0 0 57 0 0 0.458 15 0.83
159 159 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 57 0 0 0.088 2 0.97
160 160 A 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 89 9 0 0 0 57 0 0 0.384 12 0.68
161 161 A 0 88 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 0 0 57 0 0 0.470 15 0.56
162 162 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
163 163 A 0 0 0 0 0 0 0 2 0 0 0 0 98 0 0 0 0 0 0 0 57 0 0 0.088 2 0.96
164 164 A 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 2 89 4 0 0 57 0 0 0.443 14 0.81
165 165 A 11 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.336 11 0.81
166 166 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
167 167 A 0 2 2 0 0 0 0 86 0 0 0 0 0 0 9 2 0 0 0 0 57 0 0 0.556 18 0.39
168 168 A 0 0 0 0 0 0 0 0 0 0 0 19 0 0 2 79 0 0 0 0 57 0 0 0.575 19 0.68
169 169 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.000 0 1.00
170 170 A 9 0 0 0 0 0 0 0 2 0 0 2 0 0 0 86 0 2 0 0 57 0 0 0.556 18 0.49
171 171 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 89 7 0 0 57 0 0 0.428 14 0.85
172 172 A 75 5 12 0 2 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 57 0 0 0.851 28 0.76
173 173 A 2 0 95 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0.240 8 0.95
174 174 A 0 0 0 0 0 0 0 11 58 4 27 0 0 0 0 0 0 0 0 0 55 0 0 1.032 34 0.54
175 175 A 72 6 0 4 0 0 2 0 2 0 0 0 0 0 0 2 9 4 0 0 54 0 0 1.082 36 0.35
176 176 A 48 43 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 54 0 0 0.936 31 0.49
177 177 A 17 0 0 0 0 0 0 0 80 0 0 4 0 0 0 0 0 0 0 0 54 0 0 0.602 20 0.67
178 178 A 0 0 0 0 0 2 0 0 0 0 0 0 0 2 11 0 85 0 0 0 54 0 0 0.528 17 0.63
179 179 A 9 0 0 0 0 0 0 2 81 0 2 0 0 0 0 0 0 0 0 6 54 0 0 0.696 23 0.51
180 180 A 0 11 0 0 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.353 11 0.92
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
30 47 69 1 rAw
38 10 73 3 nATYa
47 62 82 1 gGq
51 57 57 2 nRTs
52 74 320 2 nRTs
53 57 57 2 nRTs
54 9 57 3 lGTSs
54 73 124 2 nRTt
55 9 29 3 lGTGs
55 73 96 2 nRTt
56 22 44 3 nTTYi
56 72 97 1 tNs
//