Complet list of 1a6s hssp fileClick here to see the 3D structure Complete list of 1a6s.hssp file
HSSP       HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID      1A6S
THRESHOLD  according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE  Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT    Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman 
DATE       file generated on 2014-03-10
HEADER     VIRAL PROTEIN                           02-MAR-98   1A6S
COMPND     MOL_ID: 1; MOLECULE: GAG POLYPROTEIN; CHAIN: A; FRAGMENT: M-DOMAIN; EN
SOURCE     MOL_ID: 1; ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS - PRAGUE C; ORGANIS
AUTHOR     J.M.MCDONNELL,D.FUSHMAN,S.M.CAHILL,W.ZHOU,A.WOLVEN, C.B.WILSON,T.D.NEL
DBREF      1A6S A    2    87  UNP    P03322   GAG_RSVP         2     87
SEQLENGTH    87
NCHAIN        1 chain(s) in 1A6S data set
NALIGN      226
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM):  (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e.  entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight

## PROTEINS : identifier and alignment statistics
  NR.    ID         STRID   %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM     PROTEIN
    1 : GAG_RSVP    2X8Q    1.00  1.00    2   87    2   87   86    0    0  701  P03322     Gag-Pro polyprotein OS=Rous sarcoma virus (strain Prague C) GN=gag-pro PE=1 SV=1
    2 : POL_RSVP    1VSD    1.00  1.00    2   87    2   87   86    0    0 1603  P03354     Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C) GN=gag-pro-pol PE=1 SV=2
    3 : Q64992_RSVSR        1.00  1.00    2   87    2   87   86    0    0  699  Q64992     Gag polyprotein OS=Rous sarcoma virus - Schmidt-Ruppin D GN=gag PE=4 SV=1
    4 : Q77YH0_9RETR2IHX    1.00  1.00    2   87    2   87   86    0    0  701  Q77YH0     Pr76 polyprotein OS=Rous sarcoma virus GN=gag PE=1 SV=1
    5 : A4LA60_ALV          0.99  1.00    2   87    2   87   86    0    0  701  A4LA60     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
    6 : B6EA48_ALV          0.99  1.00    2   87    2   87   86    0    0  701  B6EA48     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
    7 : E2G6M0_ALV          0.99  1.00    2   87    2   87   86    0    0  701  E2G6M0     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
    8 : E2G6M6_ALV          0.99  1.00    2   87    2   87   86    0    0  701  E2G6M6     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
    9 : E3ULB8_ALV          0.99  1.00    2   87    2   87   86    0    0  701  E3ULB8     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   10 : E3ULC1_ALV          0.99  1.00    2   87    2   87   86    0    0  701  E3ULC1     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   11 : E3ULC7_ALV          0.99  1.00    2   87    2   87   86    0    0  701  E3ULC7     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   12 : F6K7I5_ALV          0.99  1.00    2   87    2   87   86    0    0  701  F6K7I5     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
   13 : G1UCY2_ALV          0.99  1.00    2   87    2   87   86    0    0  701  G1UCY2     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   14 : G1UH63_ALV          0.99  1.00    2   87    2   87   86    0    0  701  G1UH63     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   15 : G1UH66_ALV          0.99  1.00    2   87    2   87   86    0    0  701  G1UH66     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   16 : G1UH69_ALV          0.99  1.00    2   87    2   87   86    0    0  701  G1UH69     Gag OS=Avian leukosis virus GN=gag PE=4 SV=1
   17 : G9I974_ALV          0.99  1.00    2   87    2   87   86    0    0  701  G9I974     Gag protein OS=Avian leukosis virus PE=4 SV=1
   18 : GAG_AVEV1           0.99  1.00    2   87    2   87   86    0    0  239  P06936     Gag polyprotein (Fragment) OS=Avian endogenous virus EV-1 GN=ev-1 PE=4 SV=1
   19 : GAG_AVIMD           0.99  1.00    2   87    2   87   86    0    0  453  P06444     Gag polyprotein OS=Avian myelocytomatosis virus HBI GN=gag PE=4 SV=1
   20 : GAG_AVISY           0.99  1.00    2   87    2   87   86    0    0  284  P03327     Gag polyprotein OS=Avian sarcoma virus (strain Y73) GN=gag PE=4 SV=2
   21 : GAG_RSVSB   1D1D    0.99  1.00    2   87    2   87   86    0    0  701  O92954     Gag-Pro polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=gag-pro PE=1 SV=1
   22 : H7CE82_ALV          0.99  1.00    2   87    2   87   86    0    0  701  H7CE82     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   23 : H7CEA1_ALV          0.99  1.00    2   87    2   87   86    0    0  701  H7CEA1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   24 : H7CEA4_ALV          0.99  1.00    2   87    2   87   86    0    0  701  H7CEA4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   25 : H7CEC4_ALV          0.99  1.00    2   87    2   87   86    0    0  701  H7CEC4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   26 : K7ZL54_ALV          0.99  1.00    2   87    2   87   86    0    0  703  K7ZL54     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   27 : POL_RSVSB   1VSD    0.99  1.00    2   87    2   87   86    0    0 1603  O92956     Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
   28 : Q03853_CHICK        0.99  1.00    2   87    2   87   86    0    0  701  Q03853     Gag protein OS=Gallus gallus GN=SE21Q1b PE=4 SV=1
   29 : Q64996_ALV          0.99  1.00    2   87    2   87   86    0    0  701  Q64996     Gag proteins OS=Avian leukosis virus HPRS103 PE=4 SV=1
   30 : Q6V5L6_ALV          0.99  1.00    2   87    2   87   86    0    0  701  Q6V5L6     Gag protein OS=Avian leukosis virus LR-9 PE=4 SV=1
   31 : Q6V5L7_ALV          0.99  1.00    2   87    2   87   86    0    0 1603  Q6V5L7     Gag/pol polyprotein OS=Avian leukosis virus LR-9 PE=3 SV=1
   32 : Q76VV4_AVIMA        0.99  1.00    2   87    2   87   86    0    0  701  Q76VV4     Gag OS=Avian myeloblastosis-associated virus 1/2 GN=gag PE=4 SV=1
   33 : Q7SQ99_ALV          0.99  1.00    2   87    2   87   86    0    0  701  Q7SQ99     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   34 : Q83131_AVIMA        0.99  1.00    2   87    2   87   86    0    0  701  Q83131     Gag OS=Avian myeloblastosis-associated virus type 1 GN=gag PE=4 SV=1
   35 : Q85480_9RETR        0.99  1.00    2   87    2   87   86    0    0  155  Q85480     P19gag protein (Fragment) OS=Rous sarcoma virus GN=p19gag PE=4 SV=1
   36 : Q86288_9RETR        0.99  1.00    2   87    2   87   86    0    0  648  Q86288     Gag protein (Fragment) OS=Rous sarcoma virus GN=gag PE=4 SV=1
   37 : Q86289_9RETR        0.99  1.00    2   87    2   87   86    0    0  648  Q86289     Gag protein (Fragment) OS=Rous sarcoma virus GN=gag PE=4 SV=1
   38 : Q86712_AVEVR        0.99  1.00    2   87    2   87   86    0    0  729  Q86712     Polyprotein OS=Avian rous-associated virus type 1 GN=polyprotein PE=3 SV=1
   39 : Q86713_AVEVR        0.99  1.00    2   87    2   87   86    0    0  149  Q86713     Gag protein (Fragment) OS=Avian rous-associated virus type 1 GN=gag PE=4 SV=1
   40 : Q86830_AVIMB        0.99  1.00    2   87    2   87   86    0    0  701  Q86830     Polyprotein I OS=Avian myeloblastosis virus PE=4 SV=1
   41 : Q89810_AVIMA        0.99  1.00    2   87    2   87   86    0    0  701  Q89810     Gag OS=Avian myeloblastosis-associated virus type 2 GN=gag PE=4 SV=1
   42 : Q995G8_ALV          0.99  1.00    2   87    2   87   86    0    0  570  Q995G8     Gag-myc fusion protein OS=Avian leukosis virus PE=4 SV=1
   43 : Q9I9V2_CHICK        0.99  1.00   11   87    1   77   77    0    0  386  Q9I9V2     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
   44 : Q9I9V5_CHICK        0.99  1.00   11   87    1   77   77    0    0  239  Q9I9V5     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
   45 : R9VYY1_ALV          0.99  1.00    2   87    2   87   86    0    0  701  R9VYY1     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
   46 : A2SXN8_ALV          0.98  0.99    2   87    2   87   86    0    0  704  A2SXN8     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   47 : B1Q2X9_ALV          0.98  0.99    2   87    2   87   86    0    0  703  B1Q2X9     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   48 : B3TFE1_ALV          0.98  1.00    2   87    2   87   86    0    0  701  B3TFE1     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   49 : B3TFE4_ALV          0.98  1.00    2   87    2   87   86    0    0  701  B3TFE4     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   50 : B3TFE7_ALV          0.98  1.00    2   87    2   87   86    0    0  701  B3TFE7     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   51 : E2G6M3_ALV          0.98  1.00    2   87    2   87   86    0    0  701  E2G6M3     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   52 : E2G6M9_ALV          0.98  1.00    2   87    2   87   86    0    0  701  E2G6M9     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   53 : E2J410_ALV          0.98  1.00    2   87    2   87   86    0    0  701  E2J410     Gag protein OS=Avian leukosis virus PE=4 SV=1
   54 : E3UTP4_ALV          0.98  0.99    2   87    2   87   86    0    0  701  E3UTP4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   55 : E3VNS2_ALV          0.98  1.00    2   87    2   87   86    0    0  701  E3VNS2     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   56 : E3VNS5_ALV          0.98  1.00    2   87    2   87   86    0    0  701  E3VNS5     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   57 : G1D8W0_ALV          0.98  1.00    2   87    2   87   86    0    0  700  G1D8W0     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   58 : G4Y2E1_ALV          0.98  1.00    2   87    2   87   86    0    0  701  G4Y2E1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   59 : G9I971_ALV          0.98  0.99    2   87    2   87   86    0    0  701  G9I971     Gag protein OS=Avian leukosis virus PE=4 SV=1
   60 : G9I977_ALV          0.98  0.99    2   87    2   87   86    0    0  701  G9I977     Gag protein OS=Avian leukosis virus PE=4 SV=1
   61 : GAG_AVIMC           0.98  1.00    2   87    2   87   86    0    0  453  P03323     Gag polyprotein OS=Avian myelocytomatosis virus MC29 GN=gag PE=4 SV=1
   62 : GAG_AVISU           0.98  0.99    2   87    2   87   86    0    0  150  P03324     Core protein p19 OS=UR2 sarcoma virus GN=gag PE=4 SV=1
   63 : GAG_RSVSA           0.98  0.99    2   87    2   87   86    0    0  701  P0C776     Gag-Pro polyprotein OS=Avian leukosis virus RSA GN=gag-pro PE=3 SV=1
   64 : H7CEC1_ALV          0.98  1.00    2   87    2   87   86    0    0  701  H7CEC1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   65 : I2FK94_ALV          0.98  0.99    2   87    2   87   86    0    0  703  I2FK94     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   66 : I6TFZ7_ALV          0.98  1.00    2   87    2   87   86    0    0  701  I6TFZ7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   67 : K0A2K3_ALV          0.98  1.00    2   87    2   87   86    0    0  701  K0A2K3     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   68 : K7ZL53_ALV          0.98  1.00    2   87    2   87   86    0    0  703  K7ZL53     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   69 : K7ZPD3_ALV          0.98  1.00    2   87    2   87   86    0    0  703  K7ZPD3     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   70 : K7ZR34_ALV          0.98  0.99    2   87    2   87   86    0    0  703  K7ZR34     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   71 : K9NUI4_ALV          0.98  0.99    2   87    2   87   86    0    0  701  K9NUI4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   72 : M9T8H4_9AVES        0.98  0.99    3   87    1   85   85    0    0  399  M9T8H4     Gag protein (Fragment) OS=Anser anser domesticus PE=4 SV=1
   73 : O56221_9RETR        0.98  1.00    2   87    2   87   86    0    0  875  O56221     P110 OS=Avian myelocytomatosis virus PE=4 SV=1
   74 : POL_RSVSA           0.98  0.99    2   87    2   87   86    0    0 1603  Q04095     Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol PE=3 SV=2
   75 : Q03852_CHICK        0.98  1.00    2   87    2   87   86    0    0  701  Q03852     Gag protein OS=Gallus gallus GN=RAV-0 PE=4 SV=1
   76 : Q03858_9RETR        0.98  1.00    2   87    2   87   86    0    0  701  Q03858     Duck adapted Rous sarcoma virus genes for gag, pol, (p19, p10, p27, p12, and p15 proteins) and 5' LTR OS=Rous sarcoma virus GN=gag PE=4 SV=1
   77 : Q64985_9RETR        0.98  0.99    2   87    2   87   86    0    0  213  Q64985     Gag-pol-Pr180 polyprotein (Fragment) OS=Rous sarcoma virus PE=4 SV=1
   78 : Q6JAW9_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAW9     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   79 : Q6JAX3_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAX3     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   80 : Q6JAX7_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAX7     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   81 : Q6JAX8_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAX8     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   82 : Q6JAX9_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAX9     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   83 : Q6JAY1_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAY1     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   84 : Q6JAY4_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAY4     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   85 : Q6JAY6_CHICK        0.98  1.00    3   87    1   85   85    0    0  255  Q6JAY6     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
   86 : Q85714_9RETR        0.98  0.99    3   84    3   84   82    0    0   84  Q85714     Mutant PrB-(HM) proviral DNA LTR(RU5)-p19 HM = highly mutated (Fragment) OS=Rous sarcoma virus PE=4 SV=1
   87 : Q86290_9RETR        0.98  0.99    2   87    2   87   86    0    0  650  Q86290     Gag protein (Fragment) OS=Rous sarcoma virus GN=gag PE=4 SV=1
   88 : Q98WV8_ALV          0.98  1.00    2   87    2   87   86    0    0 1044  Q98WV8     Pr112 gag-pol polyprotein OS=Avian leukosis virus PE=3 SV=1
   89 : R4R7H0_CHICK        0.98  1.00    2   87    2   87   86    0    0  701  R4R7H0     Gag polyprotein OS=Gallus gallus PE=4 SV=1
   90 : R4RBA0_CHICK        0.98  1.00    2   87    2   87   86    0    0 1603  R4RBA0     Gag and reverse transcriptase polyprotein OS=Gallus gallus PE=4 SV=1
   91 : D9ZFH2_ALV          0.97  0.99    2   87    2   87   86    0    0  701  D9ZFH2     Gag protein OS=Avian leukosis virus PE=4 SV=1
   92 : D9ZFH6_ALV          0.97  0.99    2   87    2   87   86    0    0  701  D9ZFH6     Gag protein OS=Avian leukosis virus PE=4 SV=1
   93 : E2G6N2_ALV          0.97  0.99    2   87    2   87   86    0    0  701  E2G6N2     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   94 : E3ULC4_ALV          0.97  1.00    2   87    2   87   86    0    0  701  E3ULC4     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
   95 : E3UTP1_ALV          0.97  1.00    2   87    2   87   86    0    0  701  E3UTP1     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   96 : E9N628_ALV          0.97  0.99    2   87    2   87   86    0    0  701  E9N628     Gag polyprotein OS=Avian leukemia virus GN=gag PE=4 SV=1
   97 : G0Z7Q1_ALV          0.97  0.99    2   87    2   87   86    0    0  701  G0Z7Q1     Gag protein OS=Avian leukosis virus PE=4 SV=1
   98 : G4Y2E4_ALV          0.97  1.00    2   87    2   87   86    0    0  701  G4Y2E4     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
   99 : G4Y2E9_ALV          0.97  0.99    2   87    2   87   86    0    0  701  G4Y2E9     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  100 : G4Y2F2_ALV          0.97  0.99    2   87    2   87   86    0    0  701  G4Y2F2     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  101 : G4Y2F5_ALV          0.97  0.99    2   87    2   87   86    0    0  701  G4Y2F5     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  102 : G9HSQ5_ALV          0.97  0.99    2   87    2   87   86    0    0  701  G9HSQ5     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  103 : G9HSQ8_ALV          0.97  0.99    2   87    2   87   86    0    0  701  G9HSQ8     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  104 : H9U3X7_ALV          0.97  0.99    2   87    2   87   86    0    0  703  H9U3X7     Gag polyprotein OS=Avian leukosis virus GN=gag PE=4 SV=1
  105 : J7LCP7_ALV          0.97  0.99    2   87    2   87   86    0    0  701  J7LCP7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  106 : K7S8H7_ALV          0.97  0.99    2   87    2   87   86    0    0  701  K7S8H7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  107 : K7ZR31_ALV          0.97  0.99    2   87    2   87   86    0    0  701  K7ZR31     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  108 : M1JS96_ALV          0.97  0.99    2   87    2   87   86    0    0  701  M1JS96     Gag protein (Precursor) OS=Avian leukosis virus GN=gag PE=4 SV=1
  109 : Q45TR3_ALV          0.97  0.99    2   87    2   87   86    0    0  701  Q45TR3     Gag polyprotein OS=Avian leukosis virus PE=4 SV=1
  110 : Q90LU2_ALV          0.97  0.98    2   87    2   87   86    0    0  701  Q90LU2     Gag proteins OS=Avian leukosis virus GN=env PE=4 SV=1
  111 : Q98WW0_ALV          0.97  0.98    2   87    2   87   86    0    0  701  Q98WW0     Pr76 gag polyprotein OS=Avian leukosis virus PE=4 SV=1
  112 : Q98WW2_ALV          0.97  0.98    2   87    2   87   86    0    0 1504  Q98WW2     Truncated Pr160 gag-pol polyprotein OS=Avian leukosis virus PE=3 SV=1
  113 : Q9I9U4_GALVA        0.97  1.00   11   87    1   77   77    0    0  239  Q9I9U4     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  114 : Q9I9U5_GALVA        0.97  1.00   11   87    1   77   77    0    0  386  Q9I9U5     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  115 : Q9I9V3_CHICK        0.97  1.00   11   87    1   77   77    0    0  239  Q9I9V3     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  116 : Q9I9V4_CHICK        0.97  1.00   11   87    1   77   77    0    0  386  Q9I9V4     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  117 : Q9I9X5_CENUR        0.97  0.99   11   87    1   77   77    0    0  251  Q9I9X5     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  118 : Q9I9X9_CENUR        0.97  0.99   11   87    1   77   77    0    0  251  Q9I9X9     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  119 : Q9W7I8_CHICK        0.97  1.00   10   87    2   79   78    0    0   94  Q9W7I8     Gag protein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  120 : R4QXY1_CHICK        0.97  0.99    2   87    2   87   86    0    0 1603  R4QXY1     Gag and reverse transcriptase polyprotein OS=Gallus gallus PE=4 SV=1
  121 : R4QXY5_CHICK        0.97  0.98    2   87    2   87   86    0    0  701  R4QXY5     Gag polyprotein OS=Gallus gallus PE=4 SV=1
  122 : R4R041_CHICK        0.97  0.98    2   87    2   87   86    0    0 1603  R4R041     Gag and reverse transcriptase polyprotein OS=Gallus gallus PE=4 SV=1
  123 : R4RAM7_CHICK        0.97  0.99    2   87    2   87   86    0    0  701  R4RAM7     Gag polyprotein OS=Gallus gallus PE=4 SV=1
  124 : Q6JAW8_CHICK        0.96  0.99    3   87    1   85   85    0    0  255  Q6JAW8     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
  125 : Q6JAX4_CHICK        0.96  0.99    3   87    1   85   85    0    0  256  Q6JAX4     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
  126 : Q6JAY3_CHICK        0.96  0.99    3   87    1   85   85    0    0  254  Q6JAY3     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
  127 : Q6JAY5_CHICK        0.96  1.00    3   87    1   85   85    0    0  255  Q6JAY5     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
  128 : Q9I874_LAGLG        0.96  0.97   11   87    1   77   77    0    0  401  Q9I874     Gag polyprotein (Fragment) OS=Lagopus lagopus GN=gag PE=4 SV=1
  129 : Q9I9S3_9GALL        0.96  0.99   11   87    1   77   77    0    0  251  Q9I9S3     Gag polyprotein (Fragment) OS=Tetrao parvirostris GN=gag PE=4 SV=1
  130 : Q9I9U3_LAGLG        0.96  0.97   11   87    1   77   77    0    0  390  Q9I9U3     Gag polyprotein (Fragment) OS=Lagopus lagopus GN=gag PE=4 SV=1
  131 : Q9I9U6_GALVA        0.96  0.99   11   87    1   77   77    0    0  239  Q9I9U6     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  132 : Q9I9U7_GALVA        0.96  1.00   11   87    1   77   77    0    0  239  Q9I9U7     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  133 : Q9I9U8_GALVA        0.96  0.99   11   87    1   77   77    0    0  239  Q9I9U8     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  134 : Q9I9U9_GALVA        0.96  0.99   11   87    1   77   77    0    0  239  Q9I9U9     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  135 : Q9I9V0_GALVA        0.96  0.99   11   87    1   77   77    0    0  239  Q9I9V0     Gag polyprotein (Fragment) OS=Gallus varius GN=gag PE=4 SV=1
  136 : Q9I9V1_CHICK        0.96  0.99   11   87    1   77   77    0    0  239  Q9I9V1     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  137 : Q9I9V8_CHICK        0.96  0.99   11   87    1   77   77    0    0  386  Q9I9V8     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  138 : Q9I9W6_FALCA        0.96  0.99   11   87    1   77   77    0    0  366  Q9I9W6     Gag polyprotein (Fragment) OS=Falcipennis canadensis GN=gag PE=4 SV=1
  139 : Q9I9X4_CENUR        0.96  0.97   11   87    1   77   77    0    0  251  Q9I9X4     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  140 : Q9I9X8_CENUR        0.96  0.97   11   87    1   77   77    0    0  243  Q9I9X8     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  141 : Q9I9Y2_CENUR        0.96  0.99   11   87    1   77   77    0    0  243  Q9I9Y2     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  142 : Q9I9Z4_9GALL        0.96  0.99   12   87    2   77   76    0    0  390  Q9I9Z4     Gag polyprotein (Fragment) OS=Tetrastes bonasia GN=gag PE=4 SV=1
  143 : G4Y2E7_ALV          0.95  0.98    2   87    2   87   86    0    0  701  G4Y2E7     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  144 : GAGC_AVISC          0.95  0.97    2   87    2   87   86    0    0  440  P05433     P47(GAG-CRK) protein OS=Avian sarcoma virus (strain CT10) PE=4 SV=1
  145 : GAG_FUJSV           0.95  0.98    2   87    2   87   86    0    0  309  P03326     Gag polyprotein OS=Fujinami sarcoma virus GN=gag PE=4 SV=1
  146 : I0DHJ8_ALV          0.95  1.00    2   87    2   87   86    0    0  701  I0DHJ8     Gag polyprotein OS=Avian leukemia virus GN=gag PE=4 SV=1
  147 : M1JT70_ALV          0.95  1.00    2   87    2   87   86    0    0  701  M1JT70     Gag protein OS=Avian leukosis virus GN=gag PE=4 SV=1
  148 : M9T671_ANSCY        0.95  0.99    3   87    1   85   85    0    0  400  M9T671     Gag protein (Fragment) OS=Anser cygnoides PE=4 SV=1
  149 : O92807_FUJSV        0.95  0.98    2   87    2   87   86    0    0 1182  O92807     P140 polyprotein OS=Fujinami sarcoma virus PE=4 SV=1
  150 : Q6JAX5_CHICK        0.95  0.99    3   87    2   86   85    0    0  405  Q6JAX5     Gag polyprotein (Fragment) OS=Gallus gallus PE=4 SV=1
  151 : Q9I9T4_PERDA        0.95  0.96   11   87    1   77   77    0    0  262  Q9I9T4     Gag polyprotein (Fragment) OS=Perdix dauuricae GN=gag PE=4 SV=1
  152 : Q9I9T5_PERDA        0.95  0.96   11   87    1   77   77    0    0  409  Q9I9T5     Gag polyprotein (Fragment) OS=Perdix dauuricae GN=gag PE=4 SV=1
  153 : Q9I9T6_LAGMU        0.95  0.96   11   87    1   77   77    0    0  395  Q9I9T6     Gag polyprotein (Fragment) OS=Lagopus muta GN=gag PE=4 SV=1
  154 : Q9I9T7_LAGMU        0.95  0.96   11   87    1   77   77    0    0  243  Q9I9T7     Gag polyprotein (Fragment) OS=Lagopus muta GN=gag PE=4 SV=1
  155 : Q9I9T8_LAGMU        0.95  0.96   11   87    1   77   77    0    0  249  Q9I9T8     Gag polyprotein (Fragment) OS=Lagopus muta GN=gag PE=4 SV=1
  156 : Q9I9V6_CHICK        0.95  0.99   11   87    1   77   77    0    0  386  Q9I9V6     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  157 : Q9I9V7_CHICK        0.95  0.99   11   87    1   77   77    0    0  239  Q9I9V7     Gag polyprotein (Fragment) OS=Gallus gallus GN=gag PE=4 SV=1
  158 : Q9I9W3_FALCA        0.95  0.97   11   87    1   77   77    0    0  381  Q9I9W3     Gag polyprotein (Fragment) OS=Falcipennis canadensis franklinii GN=gag PE=4 SV=1
  159 : Q9I9X7_CENUR        0.95  0.96   11   87    1   77   77    0    0  251  Q9I9X7     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  160 : Q9I9Y0_CENUR        0.95  0.96   11   87    1   77   77    0    0  251  Q9I9Y0     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  161 : Q9I9Y1_CENUR        0.95  0.96   11   87    1   77   77    0    0  243  Q9I9Y1     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  162 : Q9I9Z2_9GALL        0.95  0.97   11   87    1   77   77    0    0  243  Q9I9Z2     Gag polyprotein (Fragment) OS=Tetrastes bonasia GN=gag PE=4 SV=1
  163 : Q9I9Z3_9GALL        0.95  0.97   11   87    1   77   77    0    0  369  Q9I9Z3     Gag polyprotein (Fragment) OS=Tetrastes bonasia GN=gag PE=4 SV=1
  164 : Q9I9Z5_9GALL        0.95  0.97   11   87    1   77   77    0    0  369  Q9I9Z5     Gag polyprotein (Fragment) OS=Tetrastes bonasia GN=gag PE=4 SV=1
  165 : Q9I9S4_9GALL        0.94  0.97   11   87    1   77   77    0    0  398  Q9I9S4     Gag polyprotein (Fragment) OS=Tetrao parvirostris GN=gag PE=4 SV=1
  166 : Q9I9T2_PERPE        0.94  0.97   11   87    1   77   77    0    0  414  Q9I9T2     Gag polyprotein (Fragment) OS=Perdix perdix GN=gag PE=4 SV=1
  167 : Q9I9W2_DENOB        0.94  0.95   11   87    1   77   77    0    0  251  Q9I9W2     Gag polyprotein (Fragment) OS=Dendragapus obscurus GN=gag PE=4 SV=1
  168 : Q9I9X6_CENUR        0.94  0.96   11   87    1   77   77    0    0  251  Q9I9X6     Gag polyprotein (Fragment) OS=Centrocercus urophasianus GN=gag PE=4 SV=1
  169 : Q9I9Y4_BONUM        0.94  0.97   11   87    1   77   77    0    0  328  Q9I9Y4     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  170 : Q9I9Z0_BONUM        0.94  0.97   11   87    1   77   77    0    0  243  Q9I9Z0     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  171 : Q9I9S2_9GALL        0.92  0.96   11   87    1   77   77    0    0  251  Q9I9S2     Gag polyprotein (Fragment) OS=Tetrao parvirostris GN=gag PE=4 SV=1
  172 : Q9I9U0_LAGLU        0.92  0.94   11   87    1   77   77    0    0  243  Q9I9U0     Gag polyprotein (Fragment) OS=Lagopus leucura GN=gag PE=4 SV=1
  173 : Q9I9W1_DENOB        0.92  0.96   11   87    1   77   77    0    0  234  Q9I9W1     Gag polyprotein (Fragment) OS=Dendragapus obscurus GN=gag PE=4 SV=1
  174 : Q9I9X1_COLVI        0.92  0.97   11   87    1   77   77    0    0  398  Q9I9X1     Gag polyprotein (Fragment) OS=Colinus virginianus GN=gag PE=4 SV=1
  175 : Q9I9X2_9GALL        0.92  0.97   11   87    1   77   77    0    0  251  Q9I9X2     Gag polyprotein (Fragment) OS=Colinus cristatus GN=gag PE=4 SV=1
  176 : Q9I9Y3_BONUM        0.92  0.97   11   87    1   77   77    0    0  328  Q9I9Y3     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  177 : Q9I9Y5_BONUM        0.92  0.95   11   87    1   77   77    0    0  294  Q9I9Y5     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  178 : Q9I9Y6_BONUM        0.92  0.96   11   87    1   77   77    0    0  277  Q9I9Y6     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  179 : Q9I9Y7_BONUM        0.92  0.96   11   87    1   77   77    0    0  277  Q9I9Y7     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  180 : Q9I9Y8_BONUM        0.92  0.96   11   87    1   77   77    0    0  424  Q9I9Y8     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  181 : Q9I9U2_LAGLG        0.91  0.96   11   87    1   77   77    0    0  243  Q9I9U2     Gag polyprotein (Fragment) OS=Lagopus lagopus GN=gag PE=4 SV=1
  182 : Q9I9X0_COLVI        0.91  0.96   11   87    1   77   77    0    0  251  Q9I9X0     Gag polyprotein (Fragment) OS=Colinus virginianus GN=gag PE=4 SV=1
  183 : Q9I9Y9_BONUM        0.91  0.97   11   87    1   77   77    0    0  277  Q9I9Y9     Gag polyprotein (Fragment) OS=Bonasa umbellus GN=gag PE=4 SV=1
  184 : Q9I899_9GALL        0.90  0.96   11   87    1   77   77    0    0  216  Q9I899     Gag polyprotein (Fragment) OS=Tetrastes sewerzowi GN=gag PE=4 SV=1
  185 : Q9I9S1_TYMCU        0.90  0.94   11   87    1   77   77    0    0  399  Q9I9S1     Gag polyprotein (Fragment) OS=Tympanuchus cupido attwateri GN=gag PE=4 SV=1
  186 : Q9I9T3_PERPE        0.90  0.97   11   87    1   77   77    0    0  414  Q9I9T3     Gag polyprotein (Fragment) OS=Perdix perdix GN=gag PE=4 SV=1
  187 : Q9I9T9_LAGLU        0.90  0.91   11   87    1   77   77    0    0  243  Q9I9T9     Gag polyprotein (Fragment) OS=Lagopus leucura GN=gag PE=4 SV=1
  188 : Q9I9Z1_9GALL        0.90  0.96   11   87    1   77   77    0    0  363  Q9I9Z1     Gag polyprotein (Fragment) OS=Tetrastes sewerzowi GN=gag PE=4 SV=1
  189 : Q9I9X3_9GALL        0.89  0.93   11   87    1   82   82    1    5  256  Q9I9X3     Gag polyprotein (Fragment) OS=Colinus cristatus GN=gag PE=4 SV=1
  190 : Q98U10_BONUM        0.88  0.95    2   87    2   87   86    0    0  583  Q98U10     Gag protein OS=Bonasa umbellus GN=gag PE=4 SV=1
  191 : Q9I872_PHACC        0.88  0.91   11   87    1   82   82    1    5  246  Q9I872     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  192 : Q9I9R7_TYMCU        0.88  0.90   11   87    1   77   77    0    0  252  Q9I9R7     Gag polyprotein (Fragment) OS=Tympanuchus cupido attwateri GN=gag PE=4 SV=1
  193 : Q9I9R8_TYMCU        0.88  0.90   11   87    1   77   77    0    0  252  Q9I9R8     Gag polyprotein (Fragment) OS=Tympanuchus cupido attwateri GN=gag PE=4 SV=1
  194 : Q9I9R9_TYMCU        0.88  0.90   11   87    1   77   77    0    0  252  Q9I9R9     Gag polyprotein (Fragment) OS=Tympanuchus cupido attwateri GN=gag PE=4 SV=1
  195 : Q9I9S7_PHACC        0.88  0.91   11   87    1   82   82    1    5  246  Q9I9S7     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  196 : Q9I9S8_PHACC        0.88  0.91   11   87    1   82   82    1    5  246  Q9I9S8     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  197 : Q9I9T1_PERPE        0.88  0.94   11   87    1   77   77    0    0  414  Q9I9T1     Gag polyprotein (Fragment) OS=Perdix perdix GN=gag PE=4 SV=1
  198 : Q9I9U1_LAGLU        0.88  0.90   11   87    1   77   77    0    0  398  Q9I9U1     Gag polyprotein (Fragment) OS=Lagopus leucura GN=gag PE=4 SV=1
  199 : Q9I9V9_DENOB        0.88  0.90   11   87    1   77   77    0    0  234  Q9I9V9     Gag polyprotein (Fragment) OS=Dendragapus obscurus GN=gag PE=4 SV=1
  200 : Q9I9W0_DENOB        0.88  0.94   11   87    1   77   77    0    0  234  Q9I9W0     Gag polyprotein (Fragment) OS=Dendragapus obscurus GN=gag PE=4 SV=1
  201 : Q9I9Z6_BAMTH        0.88  0.96   11   87    1   77   77    0    0  274  Q9I9Z6     Gag polyprotein (Fragment) OS=Bambusicola thoracicus GN=gag PE=4 SV=1
  202 : Q9I9R6_TYMCU        0.87  0.90   11   87    1   77   77    0    0  252  Q9I9R6     Gag polyprotein (Fragment) OS=Tympanuchus cupido attwateri GN=gag PE=4 SV=1
  203 : Q9I9S0_TYMCU        0.87  0.92   11   87    1   77   77    0    0  252  Q9I9S0     Gag polyprotein (Fragment) OS=Tympanuchus cupido attwateri GN=gag PE=4 SV=1
  204 : Q9I9S5_PHACC        0.87  0.96   11   87    1   77   77    0    0  241  Q9I9S5     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  205 : Q9I9S6_PHACC        0.87  0.91   11   87    1   82   82    1    5  246  Q9I9S6     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  206 : Q9I9T0_PHACC        0.87  0.91   11   87    1   82   82    1    5  246  Q9I9T0     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  207 : Q9I9Z7_BAMTH        0.87  0.96   11   87    1   77   77    0    0  274  Q9I9Z7     Gag polyprotein (Fragment) OS=Bambusicola thoracicus GN=gag PE=4 SV=1
  208 : Q9I9Z9_BAMTH        0.87  0.95   11   87    1   77   77    0    0  405  Q9I9Z9     Gag polyprotein (Fragment) OS=Bambusicola thoracicus GN=gag PE=4 SV=1
  209 : Q9I9Z8_BAMTH        0.86  0.96   11   87    1   77   77    0    0  258  Q9I9Z8     Gag polyprotein (Fragment) OS=Bambusicola thoracicus GN=gag PE=4 SV=1
  210 : Q9I9S9_PHACC        0.84  0.95   11   87    1   77   77    0    0  241  Q9I9S9     Gag polyprotein (Fragment) OS=Phasianus colchicus GN=gag PE=4 SV=1
  211 : Q9I9W7_FALCA        0.84  0.87   11   87    1   86   86    1    9  407  Q9I9W7     Gag polyprotein (Fragment) OS=Falcipennis canadensis GN=gag PE=4 SV=1
  212 : Q9I9W4_FALCA        0.83  0.85   11   87    1   82   82    1    5  239  Q9I9W4     Gag polyprotein (Fragment) OS=Falcipennis canadensis franklinii GN=gag PE=4 SV=1
  213 : Q9I9W5_FALCA        0.83  0.85   11   87    1   82   82    1    5  239  Q9I9W5     Gag polyprotein (Fragment) OS=Falcipennis canadensis franklinii GN=gag PE=4 SV=1
  214 : Q9I9W8_FALCA        0.79  0.87   11   87    1   77   77    0    0  288  Q9I9W8     Gag polyprotein (Fragment) OS=Falcipennis canadensis GN=gag PE=4 SV=1
  215 : Q9I9W9_FALCA        0.79  0.87   11   87    1   77   77    0    0  435  Q9I9W9     Gag polyprotein (Fragment) OS=Falcipennis canadensis GN=gag PE=4 SV=1
  216 : G4XPB2_9RETR        0.58  0.77    2   87    2   87   86    0    0 1124  G4XPB2     Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  217 : Q6A2B4_9RETR        0.58  0.77    2   87    2   87   86    0    0  680  Q6A2B4     Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  218 : Q99I38_9RETR        0.58  0.76    2   87    2   87   86    0    0  671  Q99I38     Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  219 : Q9PWB8_CHICK        0.58  0.78    2   87    2   87   86    0    0  692  Q9PWB8     Gag/env fusion protein (Fragment) OS=Gallus gallus PE=4 SV=1
  220 : Q9PWB9_CHICK        0.58  0.73    2   87    2   87   86    0    0 1103  Q9PWB9     Gag/env fusion protein OS=Gallus gallus PE=4 SV=1
  221 : Q9QME3_9RETR        0.58  0.78    2   87    2   87   86    0    0  239  Q9QME3     Truncated Gag protein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
  222 : R4MNY4_CHICK        0.58  0.73    2   87    2   87   86    0    0 1137  R4MNY4     Gag-env fusion protein OS=Gallus gallus GN=gag-env PE=4 SV=1
  223 : R4MXF2_CHICK        0.58  0.77    2   87    2   87   86    0    0 1123  R4MXF2     Gag-env fusion protein OS=Gallus gallus GN=gag-env PE=4 SV=1
  224 : Q9QME4_9RETR        0.57  0.76    2   87    2   87   86    0    0 1125  Q9QME4     Gag-env fusion protein OS=Avian endogenous retrovirus EAV-HP GN=gag-env PE=4 SV=1
  225 : Q7LZ15_CHICK        0.43  0.58    2   87    2   62   86    2   25  173  Q7LZ15     Polyprotein (Fragments) OS=Gallus gallus PE=4 SV=1
  226 : R7VSS2_COLLI        0.32  0.55    2   85    2   83   84    1    2  199  R7VSS2     P47(GAG-CRK) protein OS=Columba livia GN=A306_05992 PE=4 SV=1
## ALIGNMENTS    1 -   70
 SeqNo  PDBNo AA STRUCTURE BP1 BP2  ACC NOCC  VAR  ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
     1    1 A G    >>        0   0   72    1    0                                                                        
     2    2 A E  H 3>  +     0   0  169  123   25  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE  EEEEEEEEEEEEEEEEEEEEEEEEEE
     3    3 A A  H 3>>S+     0   0   49  139   56  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  AAAAAAAAAAAAAAAAAAAAAAAAAA
     4    4 A V  H <>5S+     0   0    0  139    5  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV  VVVVVVVVVVVVVVVVVVVVVVVVVV
     5    5 A I  H  X5S+     0   0   61  139    2  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII  IIIIIIIIIIIIIIIIIIIIIIIIII
     6    6 A K  H  X>S+     0   0  135  139    0  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK  KKKKKKKKKKKKKKKKKKKKKKKKKK
     7    7 A V  I  X>S+     0   0   45  139    0  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV  VVVVVVVVVVVVVVVVVVVVVVVVVV
     8    8 A I  I  XS+     0   0   35  140   79  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS  SSSSSSSSSSSSSSSSSSSSSSSSSS
    11   11 A A  I  XXS+     0   0    6  226   57  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    12   12 A C  I  XS+     0   0    7  227    0  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    14   14 A T  I  <5S+     0   0   51  227   41  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    15   15 A Y  I  <<5 +     0   0   24  227    8  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    18   18 A K  T 3 < +     0   0  146  226    4  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    19   19 A T  T 3  S+     0   0  140  226   57  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTITTTTTTT
    20   20 A S  S <  S-     0   0   38  227   40  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    21   21 A P  S    S-     0   0  115  227    5  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    22   22 A S        +     0   0   52  227    6  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    23   23 A K  S    S-     0   0  152  227   32  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    24   24 A K  S  >>S+     0   0    8  227    1  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    25   25 A E  H  >5S+     0   0   30  227    4  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    26   26 A I  H  >5S+     0   0   81  227    5  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    27   27 A G  H >>>S+     0   0   31  227   24  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    28   28 A A  I 3X>S+     0   0    1  227   30  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    29   29 A M  I 3<<>XS+     0   0    4  227    0  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    34   34 A Q  G 3<5S+     0   0   93  227   40  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    35   35 A K  G <45S+     0   0   93  227   40  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    36   36 A E  T <45S-     0   0    6  227   49  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    37   37 A G  T  <5S+     0   0   57  227    1  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    38   38 A L    > < +     0   0   26  227   44  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    39   39 A L  T 3   +     0   0  121  226    4  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    40   40 A M  T 3  S-     0   0  164  226   83  MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMTMMMMMMMMMVMTTMMMMTMMMMT
    41   41 A S    X   -     0   0   59  226    8  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    42   42 A P  G >  S+     0   0   33  226    4  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    43   43 A S  G >   +     0   0   41  226   37  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    44   44 A D  G X  S+     0   0   15  226   36  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    45   45 A L  G <  S+     0   0   44  226   18  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    46   46 A Y  G <  S+     0   0  134  226   34  YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
    47   47 A S  S X  S-     0   0   53  226   53  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSS
    48   48 A P  T 3  S+     0   0  126  226   29  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    49   49 A G  T >  S+     0   0   61  226   27  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    50   50 A S  T <   +     0   0   21  226   46  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    51   51 A W  T 3> S+     0   0   16  226    0  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
    52   52 A D  H <> S+     0   0   91  226    1  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    53   53 A P  H  > S+     0   0   53  227   62  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    54   54 A I  H  > S+     0   0    0  226   23  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    55   55 A T  H  X S+     0   0   35  226    0  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    56   56 A A  H  X S+     0   0   59  226   37  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    57   57 A A  H >X S+     0   0    8  226    1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    58   58 A L  H >< S+     0   0    5  226    1  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    59   59 A S  H >< S+     0   0   91  226   42  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSTSSSSSSSSSSTSSSSSSTTS
    60   60 A Q  H << S+     0   0  153  226    5  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    61   61 A R  T X<  +     0   0  105  226    7  RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
    62   62 A A  T <  S+     0   0   35  226   34  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATTTTAAALAAAATAAA
    63   63 A M  T 3  S+     0   0  154  226    2  MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
    64   64 A I  S <  S+     0   0   81  226   55  IIIIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVVVVVV
    65   65 A L        +     0   0   15  227   53  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    66   66 A G        +     0   0   54  227   31  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    67   67 A K  S    S+     0   0  163  227    5  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    68   68 A S  S    S-     0   0   76  227   44  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    69   69 A G  S    S-     0   0   61  227   42  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    70   70 A E  S    S+     0   0  113  227    9  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    71   71 A L  S  > S+     0   0   34  227    7  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLSLLLLLLLLLLLLLLLLLLLLLLLL
    72   72 A K  H  > S+     0   0  143  227    8  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    73   73 A T  H  > S+     0   0    6  227    5  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    74   74 A W  H  > S+     0   0   56  227    0  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
    75   75 A G  H  X S+     0   0   17  227    2  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    76   76 A L  H  X S+     0   0   39  227   16  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    77   77 A V  H  X S+     0   0    0  227   23  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVVVVVIVVVV
    78   78 A L  H >X S+     0   0    0  227    2  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    79   79 A G  H 3X S+     0   0   28  227   20  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    80   80 A A  H >X S+     0   0    0  227    0  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    81   81 A L  H >        0   0   72    1    0                                                                        
     2    2 A E  H 3>  +     0   0  169  123   25  E EEEEE         EEEEEEEEEEEEEEEEEEEEEEEEEE       EEEE                 
     3    3 A A  H 3>>S+     0   0   49  139   56  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA       AAAAAAAA             
     4    4 A V  H <>5S+     0   0    0  139    5  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV       VVVVVVVV             
     5    5 A I  H  X5S+     0   0   61  139    2  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII       IIIIIIII             
     6    6 A K  H  X>S+     0   0  135  139    0  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK       KKKKKKKK             
     7    7 A V  I  X>S+     0   0   45  139    0  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV       VVVVVVVV             
     8    8 A I  I  XS+     0   0   35  140   79  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS      SSSSSSSSS             
    11   11 A A  I  XXS+     0   0    6  226   57  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAATAAAA
    12   12 A C  I  XS+     0   0    7  227    0  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    14   14 A T  I  <5S+     0   0   51  227   41  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    15   15 A Y  I  <<5 +     0   0   24  227    8  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGEGGGGGGGGGG
    18   18 A K  T 3 < +     0   0  146  226    4  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEEKKKKKKKEEEEKKKKKKKKKKKKKKKKK
    19   19 A T  T 3  S+     0   0  140  226   57  TTTITTITTTTTTTTTITTTTTTTTTTTTTTTTTTTTTTTIITTTTTTTTIITTTTTTTTTTTTTTTTTN
    20   20 A S  S <  S-     0   0   38  227   40  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    21   21 A P  S    S-     0   0  115  227    5  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    22   22 A S        +     0   0   52  227    6  SSSSSSSSSSSSSSSCSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    23   23 A K  S    S-     0   0  152  227   32  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    24   24 A K  S  >>S+     0   0    8  227    1  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKK
    25   25 A E  H  >5S+     0   0   30  227    4  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE
    26   26 A I  H  >5S+     0   0   81  227    5  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    27   27 A G  H >>>S+     0   0   31  227   24  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    28   28 A A  I 3X>S+     0   0    1  227   30  AAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    29   29 A M  I 3<<>XS+     0   0    4  227    0  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    34   34 A Q  G 3<5S+     0   0   93  227   40  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    35   35 A K  G <45S+     0   0   93  227   40  KKKKKKKKKKKKKKKKKKKKGGEKKKDKGGKGGKGKKKKEKKKKKKKKKKKKKKKKKKKKKKKKKEKKKK
    36   36 A E  T <45S-     0   0    6  227   49  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    37   37 A G  T  <5S+     0   0   57  227    1  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    38   38 A L    > < +     0   0   26  227   44  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLSLLLLLL
    39   39 A L  T 3   +     0   0  121  226    4  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    40   40 A M  T 3  S-     0   0  164  226   83  TMMMMMMMMMMMMMMMMMMMMMVMMAMMMMMMMTMTTAMMMMMMMMTTMMMMMMMMMTTTMMMMMMMTTT
    41   41 A S    X   -     0   0   59  226    8  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    42   42 A P  G >  S+     0   0   33  226    4  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLPPSPPPPLPPPPPPPPPPPPPPLPPPPPPPPPPPPPPPP
    43   43 A S  G >   +     0   0   41  226   37  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    44   44 A D  G X  S+     0   0   15  226   36  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    45   45 A L  G <  S+     0   0   44  226   18  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    46   46 A Y  G <  S+     0   0  134  226   34  YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
    47   47 A S  S X  S-     0   0   53  226   53  SSSSSSSSSSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTSSSSSSSTSS
    48   48 A P  T 3  S+     0   0  126  226   29  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    49   49 A G  T >  S+     0   0   61  226   27  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    50   50 A S  T <   +     0   0   21  226   46  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSFSFSFSSSSS
    51   51 A W  T 3> S+     0   0   16  226    0  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
    52   52 A D  H <> S+     0   0   91  226    1  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    53   53 A P  H  > S+     0   0   53  227   62  PPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    54   54 A I  H  > S+     0   0    0  226   23  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVIIIITIII
    55   55 A T  H  X S+     0   0   35  226    0  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    56   56 A A  H  X S+     0   0   59  226   37  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    57   57 A A  H >X S+     0   0    8  226    1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    58   58 A L  H >< S+     0   0    5  226    1  LLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    59   59 A S  H >< S+     0   0   91  226   42  SSTSSTSTTTTTTTTSSTTTSSSSSSSSSSTSSSSSSSTSSSAASSSSTTSSTTTSTSSSTATATSSSSS
    60   60 A Q  H << S+     0   0  153  226    5  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
    61   61 A R  T X<  +     0   0  105  226    7  RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
    62   62 A A  T <  S+     0   0   35  226   34  AAAAAAAAAAAAAAAAAAAAAAATATAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    63   63 A M  T 3  S+     0   0  154  226    2  MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMVMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
    64   64 A I  S <  S+     0   0   81  226   55  VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLLVVVVVVVVVVVIVIVVVVVLVVVV
    65   65 A L        +     0   0   15  227   53  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    66   66 A G        +     0   0   54  227   31  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    67   67 A K  S    S+     0   0  163  227    5  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    68   68 A S  S    S-     0   0   76  227   44  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    69   69 A G  S    S-     0   0   61  227   42  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    70   70 A E  S    S+     0   0  113  227    9  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    71   71 A L  S  > S+     0   0   34  227    7  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    72   72 A K  H  > S+     0   0  143  227    8  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    73   73 A T  H  > S+     0   0    6  227    5  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    74   74 A W  H  > S+     0   0   56  227    0  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWRWWWWWWWWWWWWWW
    75   75 A G  H  X S+     0   0   17  227    2  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    76   76 A L  H  X S+     0   0   39  227   16  LSLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLSLLLLLLLLLLLLLL
    77   77 A V  H  X S+     0   0    0  227   23  VVVVVVVVVVVVVVVVVVVVIIVVVVIIIIVIIVIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
    78   78 A L  H >X S+     0   0    0  227    2  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    79   79 A G  H 3X S+     0   0   28  227   20  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    80   80 A A  H >X S+     0   0    0  227    0  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    81   81 A L  H >        0   0   72    1    0                                                                        
     2    2 A E  H 3>  +     0   0  169  123   25    EEEEE E                                        E                    
     3    3 A A  H 3>>S+     0   0   49  139   56    AAAAAAAA                                       A                    
     4    4 A V  H <>5S+     0   0    0  139    5    VVVVVVVV                                       V                    
     5    5 A I  H  X5S+     0   0   61  139    2    IIIIIIII                                       I                    
     6    6 A K  H  X>S+     0   0  135  139    0    KKKKKKKK                                       K                    
     7    7 A V  I  X>S+     0   0   45  139    0    VVVVVVVV                                       V                    
     8    8 A I  I  XS+     0   0   35  140   79    SSSSSSSS                                       S                    
    11   11 A A  I  XXS+     0   0    6  226   57  T AAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    12   12 A C  I  XS+     0   0    7  227    0  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    14   14 A T  I  <5S+     0   0   51  227   41  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
    15   15 A Y  I  <<5 +     0   0   24  227    8  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGgGGGggGGGGGGGGggGGGG
    18   18 A K  T 3 < +     0   0  146  226    4  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKkKKKkkKKKKKKKKkkKKKK
    19   19 A T  T 3  S+     0   0  140  226   57  TTTTTSTTTTTTNTTTTTNNNTTTTTTNTTTTTTTTTTITTTTNTANNTITNNNTTNNNNNNTNTTNNNN
    20   20 A S  S <  S-     0   0   38  227   40  SSSSSSASSSVVSSSSSSSSSSSSTVSSSSTSSSSSSSSSSSSSSVSSSSSSSSSSVSSSSSSSPSSSSS
    21   21 A P  S    S-     0   0  115  227    5  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    22   22 A S        +     0   0   52  227    6  SSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    23   23 A K  S    S-     0   0  152  227   32  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKKEEKKKKKKKKEEKKKK
    24   24 A K  S  >>S+     0   0    8  227    1  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKK
    25   25 A E  H  >5S+     0   0   30  227    4  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEDEEEEEKEEEEEEE
    26   26 A I  H  >5S+     0   0   81  227    5  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
    27   27 A G  H >>>S+     0   0   31  227   24  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGS
    28   28 A A  I 3X>S+     0   0    1  227   30  AAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAATAATAAATAAAAAAAAAAAATAATAATTTT
    29   29 A M  I 3<<>XS+     0   0    4  227    0  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    34   34 A Q  G 3<5S+     0   0   93  227   40  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQLQQQQQQQQQQQQQQQLQRQQQL
    35   35 A K  G <45S+     0   0   93  227   40  KKGKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKRRKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    36   36 A E  T <45S-     0   0    6  227   49  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
    37   37 A G  T  <5S+     0   0   57  227    1  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    38   38 A L    > < +     0   0   26  227   44  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLQLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    39   39 A L  T 3   +     0   0  121  226    4  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLILLLLLLLLLLLLLLLLLLLL
    40   40 A M  T 3  S-     0   0  164  226   83  TTMMMMMMMMTTTTTMMTTTTTTTTTTTTTTTTSSTTTTTVSTATTTATTTTTTTTTTTTTTTTTTTTTT
    41   41 A S    X   -     0   0   59  226    8  SSSSSSSPSSSSFSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    42   42 A P  G >  S+     0   0   33  226    4  PPPPLPPPLPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
    43   43 A S  G >   +     0   0   41  226   37  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
    44   44 A D  G X  S+     0   0   15  226   36  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDVDDDDDDDDDDDDDDDDDDDDDDDDDDVDDDDDDDDDD
    45   45 A L  G <  S+     0   0   44  226   18  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    46   46 A Y  G <  S+     0   0  134  226   34  YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
    47   47 A S  S X  S-     0   0   53  226   53  STSSSSSSSSSSTSSSSSSSSTTTTSSSSSTSSTTSSSSSSTSTSSSTTSTSSSTTSSSSTSSTTTTTTT
    48   48 A P  T 3  S+     0   0  126  226   29  PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPSPPPPPPSPPPPPPPPPPPPPPPPPPPP
    49   49 A G  T >  S+     0   0   61  226   27  GGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    50   50 A S  T <   +     0   0   21  226   46  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSLSSSSSLLLS
    51   51 A W  T 3> S+     0   0   16  226    0  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
    52   52 A D  H <> S+     0   0   91  226    1  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
    53   53 A P  H  > S+     0   0   53  227   62  PPPPPPPPPPPPPPPPPPPPPPPPPSPPSSPPPLLPSSSSPLPPSSPPpLSPPPSSSPPPSSSPSSSPSP
    54   54 A I  H  > S+     0   0    0  226   23  IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIiIIIIIIIIIIFIIIIIIIIII
    55   55 A T  H  X S+     0   0   35  226    0  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    56   56 A A  H  X S+     0   0   59  226   37  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    57   57 A A  H >X S+     0   0    8  226    1  AAVAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAAAAAAAAAAA
    58   58 A L  H >< S+     0   0    5  226    1  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    59   59 A S  H >< S+     0   0   91  226   42  SSSTTSSTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSASSSSSSSSSSSSASSASSAAAA
    60   60 A Q  H << S+     0   0  153  226    5  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQRQQQQQQQ
    61   61 A R  T X<  +     0   0  105  226    7  RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
    62   62 A A  T <  S+     0   0   35  226   34  AAAAATTAAAVVAAAVVVVVAVVVATAVAAAVVAAAAAAAAAAAATVAAAAVVVAATVVVAVAAAAAVAA
    63   63 A M  T 3  S+     0   0  154  226    2  MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMVMMMMMMVMMMMMMVMMMMMMMMMMMMMMMMMMMM
    64   64 A I  S <  S+     0   0   81  226   55  VVVEVVVVVVVVIVVVVVVVVVVVVVAVVVVGVVVVAVVVAVVVAVEVVVVEEEVVVEEVVEAVVVVVVV
    65   65 A L        +     0   0   15  227   53  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    66   66 A G        +     0   0   54  227   31  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    67   67 A K  S    S+     0   0  163  227    5  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
    68   68 A S  S    S-     0   0   76  227   44  SSSSSSSSSSSSSSSSSSSSSSSSSSSSLLSSSSSSLLLLSSSSSSSSSSSSSSSSSSSSSSSTSSSSST
    69   69 A G  S    S-     0   0   61  227   42  GGGGGGGGGGGGGGGGGGGGGGGGGGEGGGGEGGGGGGGGGGGGGGEGGGGEEEGGGEEGGEGGGGGGGG
    70   70 A E  S    S+     0   0  113  227    9  EEEEEEEEEEEEEKKEEEEEEEEEEEDEEEEEEEEVEEEEEEVEEEEEEVEEEEEEEEEEEEEEEEEEEE
    71   71 A L  S  > S+     0   0   34  227    7  LLLLLLLLLLLLLLLLLLLLLLLLLLWLFFLLLLLFFFFFFLFLWLLLLFLLLLLLLLLLLLWLLLFFFL
    72   72 A K  H  > S+     0   0  143  227    8  KKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKRRKKKKKKKKKKKKKRKKKKRRRKKKRRRKRKKKKKKKK
    73   73 A T  H  > S+     0   0    6  227    5  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    74   74 A W  H  > S+     0   0   56  227    0  WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
    75   75 A G  H  X S+     0   0   17  227    2  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
    76   76 A L  H  X S+     0   0   39  227   16  LLLLLLLLLSLLLRRLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    77   77 A V  H  X S+     0   0    0  227   23  VVIVVIIVVVVVVVVVVVVVAVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
    78   78 A L  H >X S+     0   0    0  227    2  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
    79   79 A G  H 3X S+     0   0   28  227   20  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGKGGGGGGGGGGGGEGKGGGGKKKGGGKKGGKEGGGGGGG
    80   80 A A  H >X S+     0   0    0  227    0  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    81   81 A L  H >        0   0   72    1    0                  
     2    2 A E  H 3>  +     0   0  169  123   25       DDDDHDDDDDE
     3    3 A A  H 3>>S+     0   0   49  139   56       QQQQQQQQQQA
     4    4 A V  H <>5S+     0   0    0  139    5       VVVVVVVVVVL
     5    5 A I  H  X5S+     0   0   61  139    2       IIIIIIIIIIV
     6    6 A K  H  X>S+     0   0  135  139    0       KKKKKKKKKKK
     7    7 A V  I  X>S+     0   0   45  139    0       VVVVVVVVVVV
     8    8 A I  I  XS+     0   0   35  140   79       QQQQQQQQQQQ
    11   11 A A  I  XXS+     0   0    6  226   57  AAAAAFFFFFFFFFFL
    12   12 A C  I  XS+     0   0    7  227    0  KKKKKKKKKKKKKKKK
    14   14 A T  I  <5S+     0   0   51  227   41  TIITTDDDDDDDDDDQ
    15   15 A Y  I  <<5 +     0   0   24  227    8  gggGGGGGGGGGGGGI
    18   18 A K  T 3 < +     0   0  146  226    4  gkkKKKKKKKKKKKK.
    19   19 A T  T 3  S+     0   0  140  226   57  TTTDDSSSSSSSSSS.
    20   20 A S  S <  S-     0   0   38  227   40  SSSSSTTTTTTTTTAD
    21   21 A P  S    S-     0   0  115  227    5  PPPPPPPPPPPPPPPC
    22   22 A S        +     0   0   52  227    6  SSSSSSSSSSSSSSSK
    23   23 A K  S    S-     0   0  152  227   32  KKKKKRRGRGRGRRRA
    24   24 A K  S  >>S+     0   0    8  227    1  KKKKKKKKKKKKKKKK
    25   25 A E  H  >5S+     0   0   30  227    4  EEEEEEEEEEEEEEED
    26   26 A I  H  >5S+     0   0   81  227    5  ITTIIIIIIIIIIIIF
    27   27 A G  H >>>S+     0   0   31  227   24  GGGGGAAAAAAAAAAT
    28   28 A A  I 3X>S+     0   0    1  227   30  AAAAATTATATATTAL
    29   29 A M  I 3<<>XS+     0   0    4  227    0  LLLLLLLLLLLLLLLL
    34   34 A Q  G 3<5S+     0   0   93  227   40  QQQQQNNNNNNNNNSL
    35   35 A K  G <45S+     0   0   93  227   40  KKKKKEEEEEEEEEQQ
    36   36 A E  T <45S-     0   0    6  227   49  EEEEELLLLLLLLLPI
    37   37 A G  T  <5S+     0   0   57  227    1  GGGGGGGGGGGGGGAG
    38   38 A L    > < +     0   0   26  227   44  LLLLLEEEEEEEEEMV
    39   39 A L  T 3   +     0   0  121  226    4  LLLLLLLLLLLLLL.I
    40   40 A M  T 3  S-     0   0  164  226   83  TTTTTDDDEDDDDD.E
    41   41 A S    X   -     0   0   59  226    8  SSSSSSSSSSSSSS.Q
    42   42 A P  G >  S+     0   0   33  226    4  PPPPPPPPPPPPPP.P
    43   43 A S  G >   +     0   0   41  226   37  SSSSSRRRRRCRRR.V
    44   44 A D  G X  S+     0   0   15  226   36  DDDDDHHYHYHYHH.E
    45   45 A L  G <  S+     0   0   44  226   18  LLLLLIIVVVIVIV.I
    46   46 A Y  G <  S+     0   0  134  226   34  YHHYYLLLLLLLLL.L
    47   47 A S  S X  S-     0   0   53  226   53  TSSSSDDDDDDDDD.H
    48   48 A P  T 3  S+     0   0  126  226   29  PPPSSSSSSSSSSS.P
    49   49 A G  T >  S+     0   0   61  226   27  GGGGGNNSSSSSNS.E
    50   50 A S  T <   +     0   0   21  226   46  SSSSSRRRRRRRRR.V
    51   51 A W  T 3> S+     0   0   16  226    0  WWWWWWWWWWWWWW.W
    52   52 A D  H <> S+     0   0   91  226    1  DDDEEDDDDDDDDD.D
    53   53 A P  H  > S+     0   0   53  227   62  PPPPPLLLLLLLLLAK
    54   54 A I  H  > S+     0   0    0  226   23  IIIIILLLLLLLLL.C
    55   55 A T  H  X S+     0   0   35  226    0  TTTTTTTTTTTTTT.T
    56   56 A A  H  X S+     0   0   59  226   37  AEEAASSSSLSLSL.K
    57   57 A A  H >X S+     0   0    8  226    1  AAAAAAAAAAAAAA.A
    58   58 A L  H >< S+     0   0    5  226    1  LLLFFLLLLLLLLL.L
    59   59 A S  H >< S+     0   0   91  226   42  SSSSSCCCCCCCCC.A
    60   60 A Q  H << S+     0   0  153  226    5  QQQQQQQQQQQQQQ.E
    61   61 A R  T X<  +     0   0  105  226    7  QRRRRRRRRRRRRR.E
    62   62 A A  T <  S+     0   0   35  226   34  AAAVVAAAAAAAAA.R
    63   63 A M  T 3  S+     0   0  154  226    2  MMMMMMMMMMMMMM.M
    64   64 A I  S <  S+     0   0   81  226   55  VVVEEAAAAAAAAA.S
    65   65 A L        +     0   0   15  227   53  LLLLLSSSSSSSSSSS
    66   66 A G        +     0   0   54  227   31  GGGGGQQQQQQQQQQG
    67   67 A K  S    S+     0   0  163  227    5  KKKKKKKKKKKKKKKS
    68   68 A S  S    S-     0   0   76  227   44  SLLVVAAAAAAAAAAG
    69   69 A G  S    S-     0   0   61  227   42  GGGEETTTTTTTTTTK
    70   70 A E  S    S+     0   0  113  227    9  EEEEEEEEEEEEEEEN
    71   71 A L  S  > S+     0   0   34  227    7  LWWMMLLLLLLLLLLL
    72   72 A K  H  > S+     0   0  143  227    8  KRRRRKKKKKKKKKKK
    73   73 A T  H  > S+     0   0    6  227    5  TTTTTTTTTTTTTTTS
    74   74 A W  H  > S+     0   0   56  227    0  WWWWWWWWWWWWWWWW
    75   75 A G  H  X S+     0   0   17  227    2  GGGAAGGGGGGGGGGG
    76   76 A L  H  X S+     0   0   39  227   16  LLLRRLLLLLLLLLLK
    77   77 A V  H  X S+     0   0    0  227   23  VVVVVMMMMMMMMMIV
    78   78 A L  H >X S+     0   0    0  227    2  LLLLLLLLLLLLLLLV
    79   79 A G  H 3X S+     0   0   28  227   20  GGGKKGGGGGGGGGGE
    80   80 A A  H >X S+     0   0    0  227    0  AAAAAAAAAAAAAAAA
    81   81 A L  H