Complet list of 1a6b hssp file
Complete list of 1a6b.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1A6B
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-03-10
HEADER VIRAL PROTEIN/DNA 23-FEB-98 1A6B
COMPND MOL_ID: 1; MOLECULE: DNA (5'-D(*AP*CP*GP*CP*C)-3'); CHAIN: A; ENGINEER
SOURCE MOL_ID: 1; SYNTHETIC: YES; MOL_ID: 2
AUTHOR W.SCHUELER,C.-Z.DONG,K.WECKER,B.P.ROQUES
DBREF 1A6B B 14 53 UNP P03332 GAG_MLVMO 492 531
DBREF 1A6B A 1 5 PDB 1A6B 1A6B 1 5
SEQLENGTH 40
NCHAIN 1 chain(s) in 1A6B data set
NALIGN 157
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : GAG80_MLVMN 1.00 1.00 1 40 580 619 40 0 0 626 Q8UN02 Glycosylated Gag polyprotein OS=Moloney murine leukemia virus (strain neuropathogenic variant ts1-92b) GN=gag PE=3 SV=1
2 : GAG_MLVMS 1WWD 1.00 1.00 1 40 492 531 40 0 0 538 P03332 Gag polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag PE=1 SV=4
3 : POL_MLVMS 1ZTT 1.00 1.00 1 40 492 531 40 0 0 1738 P03355 Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4
4 : Q8UN00_MLVMO 1.00 1.00 1 40 492 531 40 0 0 1738 Q8UN00 Pr180 Gag-Pro-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pro-pol PE=4 SV=1
5 : Q8UN01_MLVMO 1.00 1.00 1 40 492 531 40 0 0 538 Q8UN01 Pr65 Gag polyprotein OS=Moloney murine leukemia virus GN=gag PE=4 SV=1
6 : Q1KYL5_9GAMR 0.98 1.00 1 40 491 530 40 0 0 537 Q1KYL5 Gag polyprotein pr65 OS=Murine leukemia virus PE=4 SV=1
7 : Q1KYL6_9GAMR 0.98 1.00 1 40 491 530 40 0 0 1734 Q1KYL6 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
8 : Q9YKA0_9GAMR 0.98 1.00 1 40 488 527 40 0 0 534 Q9YKA0 Gag polypeptide OS=Murine leukemia virus PE=4 SV=1
9 : A7LM24_9GAMR 0.95 1.00 1 40 491 530 40 0 0 1618 A7LM24 Putative gag-pro-pol polyprotein (Fragment) OS=Xenotropic murine leukemia virus PE=4 SV=1
10 : D0UFA3_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1733 D0UFA3 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
11 : D0UFA4_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 D0UFA4 Gag protein OS=XMRV GN=gag PE=4 SV=1
12 : D0UFA6_9GAMR3P1G 0.95 1.00 1 40 490 529 40 0 0 1733 D0UFA6 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
13 : D5H3E2_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1733 D5H3E2 Gag-pro-pol polyprotein OS=Xenotropic MuLV-related virus 22Rv1/CWR-R1 GN=gag-pro-pol PE=4 SV=1
14 : E7DW15_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E7DW15 Gag protein OS=XMRV PE=4 SV=1
15 : E7DW17_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E7DW17 Gag protein OS=XMRV PE=4 SV=1
16 : E7DW18_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E7DW18 Gag protein OS=XMRV PE=4 SV=1
17 : E7DW21_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E7DW21 Gag protein OS=XMRV PE=4 SV=1
18 : E7DW23_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E7DW23 Gag protein OS=XMRV PE=4 SV=1
19 : E7DW25_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E7DW25 Gag protein OS=XMRV PE=4 SV=1
20 : E9LY60_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1733 E9LY60 Putative gag-pro-pol polyprotein OS=XMRV PE=4 SV=1
21 : E9LY61_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E9LY61 Putative gag protein OS=XMRV PE=4 SV=1
22 : E9LY63_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1733 E9LY63 Putative gag-pro-pol polyprotein OS=XMRV PE=4 SV=1
23 : E9LY64_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 E9LY64 Putative gag protein OS=XMRV PE=4 SV=1
24 : F2YZK2_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1737 F2YZK2 Putative gag-pol polyprotein OS=XMRV-like mouse endogenous retrovirus mERV-XL PE=4 SV=1
25 : F2YZK3_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 F2YZK3 Putative gag polyprotein OS=XMRV-like mouse endogenous retrovirus mERV-XL PE=4 SV=1
26 : F6IZV5_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1737 F6IZV5 Putative gag-pro-pol polyprotein OS=PreXMRV-2 GN=gag-pro-pol PE=4 SV=1
27 : F6IZV6_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 F6IZV6 Putative gag polyprotein OS=PreXMRV-2 GN=gag PE=4 SV=1
28 : F8TLS7_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1733 F8TLS7 Putative gag-pro-pol polyprotein OS=Xenotropic MuLV-related virus RKO GN=gag-pro-pol PE=4 SV=1
29 : F8TLS8_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 F8TLS8 Putative gag polyprotein OS=Xenotropic MuLV-related virus RKO GN=gag PE=4 SV=1
30 : F8UU41_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1733 F8UU41 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
31 : F8UU42_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 F8UU42 Putative gag polyprotein OS=Xenotropic murine leukemia virus GN=gag PE=4 SV=1
32 : G4V4Z1_MOUSE 0.95 1.00 1 40 490 529 40 0 0 1737 G4V4Z1 Gag-pro-pol polyprotein OS=Mus musculus GN=gag-pro-pol PE=4 SV=1
33 : G4V4Z2_MOUSE 0.95 1.00 1 40 490 529 40 0 0 536 G4V4Z2 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
34 : GAG_MLVAV 2Y4Z 0.95 1.00 1 40 491 530 40 0 0 537 P03336 Gag polyprotein OS=AKV murine leukemia virus GN=gag PE=1 SV=3
35 : GAG_MLVBM 0.95 1.00 1 40 491 530 40 0 0 537 P29167 Gag polyprotein OS=Murine leukemia virus (strain BM5 eco) GN=gag PE=3 SV=3
36 : GAG_MLVCB 0.95 1.00 1 40 490 529 40 0 0 536 P27460 Gag polyprotein OS=Cas-Br-E murine leukemia virus GN=gag PE=3 SV=3
37 : GAG_MLVDE 0.95 1.00 1 40 490 529 40 0 0 536 P29168 Gag polyprotein OS=Murine leukemia virus (strain DEF27) GN=gag PE=3 SV=3
38 : GAG_MLVDU 0.95 0.98 1 40 483 522 40 0 0 529 P23090 Gag polyprotein OS=Duplan murine leukemia virus GN=gag PE=3 SV=3
39 : GAG_MLVHO 0.95 1.00 1 40 494 533 40 0 0 540 P21435 Gag polyprotein OS=Hortulanus murine leukemia virus GN=gag PE=3 SV=3
40 : GAG_XMRV3 0.95 1.00 1 40 490 529 40 0 0 536 Q2F7J2 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag PE=3 SV=1
41 : GAG_XMRV4 0.95 1.00 1 40 490 529 40 0 0 536 Q2F7I9 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag PE=3 SV=1
42 : GAG_XMRV6 0.95 1.00 1 40 490 529 40 0 0 536 Q27ID9 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag PE=3 SV=1
43 : O41249_MLVRA 0.95 1.00 1 40 492 531 40 0 0 538 O41249 Gag polyprotein OS=Rauscher murine leukemia virus PE=4 SV=1
44 : POL_XMRV3 3V1O 0.95 1.00 1 40 490 529 40 0 0 1733 Q2F7J3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1
45 : POL_XMRV4 0.95 1.00 1 40 490 529 40 0 0 1733 Q2F7J0 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1
46 : POL_XMRV6 3P1G 0.95 1.00 1 40 490 529 40 0 0 1733 A1Z651 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1
47 : Q1KYL8_MOUSE 0.95 1.00 2 40 492 530 39 0 0 537 Q1KYL8 Gag polyprotein pr65 OS=Mus musculus PE=4 SV=1
48 : Q1KYL9_MOUSE 0.95 1.00 2 40 492 530 39 0 0 1734 Q1KYL9 Gag-pro-pol polyprotein OS=Mus musculus PE=4 SV=1
49 : Q1KYM1_MOUSE 0.95 1.00 1 40 491 530 40 0 0 537 Q1KYM1 Gag polyprotein pr65 OS=Mus musculus PE=4 SV=1
50 : Q1KYM2_MOUSE 0.95 1.00 1 40 491 530 40 0 0 1734 Q1KYM2 Gag-pro-pol polyprotein OS=Mus musculus PE=4 SV=1
51 : Q4W673_9GAMR 0.95 1.00 1 40 491 530 40 0 0 537 Q4W673 Gag polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
52 : Q4W675_9GAMR 0.95 1.00 1 40 491 530 40 0 0 537 Q4W675 Gag polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
53 : Q60588_MOUSE 0.95 1.00 1 40 491 530 40 0 0 537 Q60588 Gag protein OS=Mus musculus GN=gag PE=4 SV=2
54 : Q60FS7_9GAMR 0.95 1.00 1 40 488 527 40 0 0 534 Q60FS7 GAG polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
55 : Q6YIY0_MOUSE 0.95 1.00 1 40 490 529 40 0 0 536 Q6YIY0 Gag protein OS=Mus musculus PE=2 SV=1
56 : Q7SVK7_9GAMR 0.95 1.00 1 40 491 530 40 0 0 1734 Q7SVK7 Gag-pol polyprotein OS=Murine leukemia virus GN=gag-pol PE=4 SV=1
57 : Q7ZJT6_9GAMR 0.95 1.00 1 40 490 529 40 0 0 1736 Q7ZJT6 Gag-pro-pol polyprotein (Precursor) OS=Amphotropic murine leukemia virus PE=4 SV=1
58 : Q7ZJT8_9GAMR 0.95 1.00 1 40 490 529 40 0 0 536 Q7ZJT8 Gag polyprotein OS=Amphotropic murine leukemia virus PE=4 SV=1
59 : Q83361_9GAMR 0.95 1.00 1 40 491 530 40 0 0 537 Q83361 Gag polyprotein OS=Murine leukemia virus PE=4 SV=1
60 : Q83362_9GAMR 0.95 1.00 1 40 491 530 40 0 0 1736 Q83362 Gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
61 : Q83397_9GAMR 0.95 1.00 1 40 491 530 40 0 0 537 Q83397 Putative gag protein OS=Murine leukemia virus GN=gag PE=4 SV=1
62 : Q85655_9GAMR 0.95 0.98 1 40 14 53 40 0 0 56 Q85655 Gag p10 protein (Fragment) OS=Murine leukemia virus PE=4 SV=1
63 : Q86963_9RETR 0.95 1.00 1 40 490 529 40 0 0 536 Q86963 Gag OS=Murine AIDS virus-related provirus GN=gag PE=4 SV=1
64 : Q8BFR9_MOUSE 0.95 1.00 1 40 491 530 40 0 0 537 Q8BFR9 Putative uncharacterized protein OS=Mus musculus GN=Mela PE=2 SV=1
65 : Q8C1W7_MOUSE 0.95 1.00 1 40 491 530 40 0 0 537 Q8C1W7 Putative uncharacterized protein OS=Mus musculus GN=Mela PE=2 SV=1
66 : Q900B1_9GAMR 0.95 1.00 1 40 491 530 40 0 0 537 Q900B1 Gag protein OS=Murine leukemia virus GN=gag PE=4 SV=1
67 : Q9E7M1_9GAMR3SM1 0.95 1.00 1 40 490 529 40 0 0 1733 Q9E7M1 Putative gag-pro-pol polyprotein OS=DG-75 Murine leukemia virus PE=1 SV=1
68 : Q9J8E2_9GAMR 0.95 1.00 1 40 491 530 40 0 0 1734 Q9J8E2 Putative gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
69 : Q9Q9A6_9GAMR 0.95 1.00 1 40 491 530 40 0 0 537 Q9Q9A6 Putative gag polyprotein OS=Murine leukemia virus PE=4 SV=1
70 : Q9WHV6_9GAMR3BP9 0.95 1.00 1 40 491 530 40 0 0 537 Q9WHV6 Gag protein OS=Murine leukemia virus PE=4 SV=1
71 : T2ASM2_9GAMR 0.95 1.00 1 40 490 529 40 0 0 597 T2ASM2 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
72 : T2AUD0_9GAMR 0.95 1.00 1 40 490 529 40 0 0 597 T2AUD0 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
73 : T2AUG5_9GAMR 0.95 1.00 1 40 490 529 40 0 0 597 T2AUG5 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
74 : T2AUH0_9GAMR 0.95 1.00 1 40 490 529 40 0 0 597 T2AUH0 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
75 : A7UJ19_9GAMR 0.93 1.00 1 40 490 529 40 0 0 1736 A7UJ19 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
76 : A7UJ20_9GAMR 0.93 1.00 1 40 490 529 40 0 0 1736 A7UJ20 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
77 : A7UJ21_9GAMR 0.93 1.00 1 40 490 529 40 0 0 1736 A7UJ21 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
78 : E5RDS6_9GAMR 0.93 1.00 1 40 491 530 40 0 0 1734 E5RDS6 Putative gag-pro-pol polyprotein OS=Murine leukemia virus N417 GN=gag-pro-pol PE=4 SV=1
79 : E5RDS7_9GAMR 0.93 1.00 1 40 491 530 40 0 0 537 E5RDS7 Putative gag protein OS=Murine leukemia virus N417 GN=gag PE=4 SV=1
80 : F2QL73_9GAMR 0.93 1.00 1 40 481 520 40 0 0 1724 F2QL73 Gag-pro-pol polyprotein (Fragment) OS=XMRV GN=gag-pro-pol PE=4 SV=1
81 : F2QL74_9GAMR 0.93 1.00 1 40 481 520 40 0 0 527 F2QL74 Gag polyprotein (Fragment) OS=XMRV GN=gag PE=4 SV=1
82 : F8LFQ8_9GAMR 0.93 1.00 1 40 490 529 40 0 0 1733 F8LFQ8 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
83 : F8LFQ9_9GAMR 0.93 1.00 1 40 490 529 40 0 0 536 F8LFQ9 Putative gag polyprotein OS=XMRV GN=gag PE=4 SV=1
84 : F8UU35_9GAMR 0.93 1.00 1 40 491 530 40 0 0 1734 F8UU35 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
85 : F8UU38_9GAMR 0.93 1.00 1 40 491 530 40 0 0 1734 F8UU38 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
86 : F8UU39_9GAMR 0.93 1.00 1 40 491 530 40 0 0 537 F8UU39 Putative gag polyprotein OS=Xenotropic murine leukemia virus GN=gag PE=4 SV=1
87 : GAG_MLVRD 0.93 1.00 1 40 491 530 40 0 0 537 P11269 Gag polyprotein OS=Radiation murine leukemia virus GN=gag PE=1 SV=3
88 : Q67457_MLVFR 0.93 1.00 1 40 492 531 40 0 0 538 Q67457 Pr65 OS=Friend murine leukemia virus GN=gag PE=4 SV=2
89 : Q83371_MLVMO 0.93 1.00 1 40 182 221 40 0 0 560 Q83371 Reverse transcriptase (Fragment) OS=Moloney murine leukemia virus GN=pol PE=4 SV=1
90 : Q83383_9GAMR 0.93 1.00 1 40 491 530 40 0 0 537 Q83383 Gag protein OS=Murine leukemia virus GN=gag PE=4 SV=2
91 : Q85734_9GAMR 0.93 1.00 1 40 492 531 40 0 0 538 Q85734 Gag protein OS=Murine type C retrovirus GN=gag PE=4 SV=1
92 : P70355_MOUSE 0.92 0.97 2 40 492 530 39 0 0 1734 P70355 Gag-Pol polyprotein OS=Mus musculus GN=Mela PE=2 SV=1
93 : GAG_MLVF5 0.90 1.00 1 40 493 532 40 0 0 539 P26807 Gag polyprotein OS=Friend murine leukemia virus (isolate 57) GN=gag PE=3 SV=3
94 : GAG_MLVFF 0.90 1.00 1 40 492 531 40 0 0 538 P26806 Gag polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=gag PE=1 SV=3
95 : GAG_MLVFP 0.90 1.00 1 40 492 531 40 0 0 538 P26805 Gag polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=gag PE=3 SV=3
96 : O12373_9GAMR 0.90 1.00 1 40 492 531 40 0 0 538 O12373 Polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
97 : O39735_MLVFR 0.88 0.98 1 40 492 531 40 0 0 1738 O39735 Gag-pol polyprotein (Precursor protein) (Precursor) OS=Friend murine leukemia virus PE=4 SV=1
98 : O39736_MLVFR 0.88 0.98 1 40 492 531 40 0 0 538 O39736 Gag polyprotein (Precursor) OS=Friend murine leukemia virus GN=gag PE=4 SV=2
99 : O56222_MSVMO 0.88 0.95 1 40 492 531 40 0 0 538 O56222 Pr65 OS=Moloney murine sarcoma virus GN=gag PE=4 SV=2
100 : Q5PYI2_9GAMR 0.88 1.00 1 40 487 526 40 0 0 533 Q5PYI2 Gag polyprotein OS=Murine leukemia virus PE=4 SV=1
101 : Q5PYI3_9GAMR 0.88 1.00 1 40 487 526 40 0 0 1736 Q5PYI3 Gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
102 : GAG_MSVMO 0.85 0.95 1 40 492 531 40 0 0 538 P03334 Gag polyprotein OS=Moloney murine sarcoma virus GN=gag PE=1 SV=3
103 : Q7ZKZ4_9GAMR 0.83 0.90 11 40 1 30 30 0 0 38 Q7ZKZ4 Gag protein (Fragment) OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
104 : Q7ZKZ6_9GAMR 0.80 0.87 11 40 1 30 30 0 0 38 Q7ZKZ6 Gag protein (Fragment) OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
105 : Q7ZKZ8_9GAMR 0.80 0.90 11 40 1 30 30 0 0 38 Q7ZKZ8 Gag protein (Fragment) OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
106 : Q7ZL05_9GAMR 0.73 0.88 1 40 474 513 40 0 0 521 Q7ZL05 Gag protein OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
107 : Q7ZL07_9GAMR 0.73 0.88 1 40 474 513 40 0 0 521 Q7ZL07 Gag protein OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
108 : M3WYE3_FELCA 0.71 0.90 8 38 459 489 31 0 0 1326 M3WYE3 Uncharacterized protein OS=Felis catus PE=4 SV=1
109 : M3XFF7_FELCA 0.71 0.90 1 31 464 494 31 0 0 516 M3XFF7 Uncharacterized protein OS=Felis catus PE=4 SV=1
110 : Q6TXG6_RAT 0.70 0.87 1 30 237 266 30 0 0 2042 Q6TXG6 LRRGT00033 OS=Rattus norvegicus PE=2 SV=1
111 : G3XDD7_FLV 0.68 0.90 1 31 541 571 31 0 0 1790 G3XDD7 Gag-pol polyprotein OS=Feline leukemia virus PE=4 SV=1
112 : GAG_FLV 0.68 0.90 1 31 537 567 31 0 0 580 P10262 Gag polyprotein OS=Feline leukemia virus GN=gag PE=3 SV=1
113 : I7HEG0_FLV 0.68 0.90 1 31 552 582 31 0 0 595 I7HEG0 Gag protein OS=Feline leukemia virus GN=gag PE=4 SV=1
114 : O89811_FLV 0.68 0.90 1 31 537 567 31 0 0 1786 O89811 Gag-pol polyprotein gPr80 OS=Feline leukemia virus PE=4 SV=1
115 : Q85521_FLV 0.68 0.90 1 31 537 567 31 0 0 1784 Q85521 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
116 : D0E0H1_ORCOR 0.67 0.78 4 39 484 519 36 0 0 527 D0E0H1 Gag protein OS=Orcinus orca GN=gag PE=4 SV=1
117 : I6RYC7_9GAMR 0.66 0.78 1 32 151 182 32 0 0 194 I6RYC7 Gag (Fragment) OS=Megaderma lyra retrovirus PE=2 SV=1
118 : K0H563_FLV 0.65 0.90 1 31 537 567 31 0 0 1786 K0H563 Pr80 gag polyprotein (Fragment) OS=Feline leukemia virus PE=4 SV=1
119 : K0H6P0_FLV 0.65 0.90 1 31 537 567 31 0 0 1786 K0H6P0 Pr80 gag-pol protein (Fragment) OS=Feline leukemia virus PE=4 SV=1
120 : K0IZA4_FLV 0.65 0.90 1 31 541 571 31 0 0 584 K0IZA4 Gag polyprotein OS=Feline leukemia virus GN=gag PE=4 SV=1
121 : G3IAD2_CRIGR 0.64 0.87 1 39 115 153 39 0 0 163 G3IAD2 Gag polyprotein OS=Cricetulus griseus GN=I79_020552 PE=4 SV=1
122 : Q83378_9GAMR 0.64 0.86 1 36 474 509 36 0 0 517 Q83378 Gag protein OS=Rat leukemia virus GN=gag PE=4 SV=1
123 : U6FUB3_ECHMU 0.64 0.79 8 40 42 74 33 0 0 87 U6FUB3 Gag pol polyprotein (Fragment) OS=Echinococcus multilocularis GN=EmuJ_000273600 PE=4 SV=1
124 : U6FVY2_ECHMU 0.64 0.79 8 40 42 74 33 0 0 87 U6FVY2 Gag pro pol polyprotein OS=Echinococcus multilocularis GN=EmuJ_000280200 PE=4 SV=1
125 : GAG_BAEVM 0.63 0.84 1 38 491 528 38 0 0 537 P03341 Gag polyprotein OS=Baboon endogenous virus (strain M7) GN=gag PE=3 SV=4
126 : M3WYN2_FELCA 0.62 0.79 5 38 451 484 34 0 0 498 M3WYN2 Uncharacterized protein OS=Felis catus PE=4 SV=1
127 : G3GSE2_CRIGR 0.61 0.86 1 36 495 530 36 0 0 538 G3GSE2 Gag polyprotein OS=Cricetulus griseus GN=I79_000465 PE=4 SV=1
128 : M3WV02_FELCA 0.58 0.82 5 37 463 495 33 0 0 512 M3WV02 Uncharacterized protein OS=Felis catus PE=4 SV=1
129 : I7GU46_FELCA 0.56 0.83 1 36 512 547 36 0 0 1749 I7GU46 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
130 : I7GU47_FELCA 0.56 0.83 1 36 512 547 36 0 0 558 I7GU47 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
131 : I7HGJ5_FELCA 0.56 0.83 1 36 512 547 36 0 0 1748 I7HGJ5 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
132 : M3X0L9_FELCA 0.56 0.83 1 36 468 503 36 0 0 514 M3X0L9 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
133 : T2FFW2_9GAMR 0.56 0.75 2 33 459 490 32 0 0 499 T2FFW2 Gag protein OS=Duck infectious anemia virus GN=gag PE=4 SV=1
134 : A7KMF4_9GAMR 0.55 0.87 1 38 504 541 38 0 0 1740 A7KMF4 Gag-Pol polyprotein (Precursor) OS=RD114 retrovirus PE=4 SV=1
135 : A7KMF5_9GAMR 0.55 0.87 1 38 504 541 38 0 0 550 A7KMF5 Gag polyprotein (Precursor) OS=RD114 retrovirus PE=4 SV=1
136 : A7LKA6_9GAMR 0.55 0.87 1 38 504 541 38 0 0 1739 A7LKA6 Gag-pol polyprotein OS=RD114 retrovirus GN=gag PE=4 SV=1
137 : E0D6V1_9GAMR 0.55 0.87 1 38 504 541 38 0 0 1740 E0D6V1 Gag-Pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
138 : I4DHB5_9GAMR 0.55 0.87 1 38 504 541 38 0 0 1740 I4DHB5 Gag-pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
139 : I4DHB7_9GAMR 0.55 0.87 1 38 504 541 38 0 0 1740 I4DHB7 Gag-pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
140 : I7GZT4_FELCA 0.55 0.87 1 38 501 538 38 0 0 1737 I7GZT4 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
141 : Q88269_AVIRE 0.55 0.74 2 32 17 47 31 0 0 179 Q88269 Gag protein (Fragment) OS=Spleen necrosis virus GN=gag PE=4 SV=1
142 : M3X372_FELCA 0.54 0.80 4 38 460 494 35 0 0 508 M3X372 Uncharacterized protein OS=Felis catus PE=4 SV=1
143 : B7U6K7_AVIRE 0.53 0.75 2 33 459 490 32 0 0 499 B7U6K7 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
144 : C7FGW7_AVIRE 0.53 0.75 2 33 459 490 32 0 0 499 C7FGW7 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
145 : K7S4S2_AVIRE 0.53 0.75 2 33 459 490 32 0 0 499 K7S4S2 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
146 : O36448_FOWPV 0.53 0.75 2 33 459 490 32 0 0 499 O36448 Gag OS=Fowlpox virus GN=gag PE=4 SV=1
147 : Q1A1A9_AVIRE 0.53 0.75 2 33 459 490 32 0 0 499 Q1A1A9 Gag protein OS=Avian reticuloendotheliosis virus PE=4 SV=1
148 : Q462R0_AVIRE 0.53 0.75 2 33 459 490 32 0 0 499 Q462R0 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
149 : Q5G5J9_AVIRE 0.53 0.75 2 33 460 491 32 0 0 500 Q5G5J9 Gag protein OS=Avian reticuloendotheliosis virus PE=4 SV=1
150 : Q80JG8_FOWPV 0.53 0.75 2 33 459 490 32 0 0 499 Q80JG8 Gag protein (Precursor) OS=Fowlpox virus PE=4 SV=1
151 : S5VPZ4_AVIRE 0.53 0.75 2 33 459 490 32 0 0 499 S5VPZ4 Gag protein OS=Avian reticuloendotheliosis virus GN=gag PE=4 SV=1
152 : Q69FA7_PHAVU 0.50 0.73 8 37 205 234 30 0 0 324 Q69FA7 Retrovirus-related pol polyprotein (Fragment) OS=Phaseolus vulgaris GN=BA1 PE=4 SV=1
153 : T1FT90_HELRO 0.50 0.68 2 35 104 137 34 0 0 166 T1FT90 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_191738 PE=4 SV=1
154 : L8HKJ9_ACACA 0.47 0.56 1 36 52 87 36 0 0 263 L8HKJ9 Zinc knuckle domain containing protein OS=Acanthamoeba castellanii str. Neff GN=ACA1_176040 PE=4 SV=1
155 : M3X4F0_FELCA 0.47 0.69 5 40 463 498 36 0 0 505 M3X4F0 Uncharacterized protein OS=Felis catus PE=4 SV=1
156 : Q7LYZ0_9RETR 0.47 0.72 1 36 454 489 36 0 0 608 Q7LYZ0 Gag polyprotein OS=Human endogenous retrovirus S71 PE=4 SV=1
157 : T2FGY7_9GAMR 0.47 0.72 1 36 462 497 36 0 0 507 T2FGY7 Gag protein OS=Galidia ERV GN=gag PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 14 B G 0 0 105 131 29 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGG
2 15 B E > + 0 0 108 146 60 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
3 16 B R T 3 S+ 0 0 231 146 39 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
4 17 B R T 3 S+ 0 0 246 148 46 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
5 18 B R < + 0 0 104 151 33 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 19 B S - 0 0 102 151 48 SSSSSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
7 20 B Q S S+ 0 0 91 151 69 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
8 21 B L + 0 0 83 155 18 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
9 22 B D - 0 0 49 155 42 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
10 23 B R S S+ 0 0 203 155 24 RRRRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKKKRKKKKKKKKKKHKKKKKKKEKKKKKKKK
11 24 B D S S+ 0 0 137 158 16 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
12 25 B Q S S- 0 0 61 158 5 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
13 26 B C - 0 0 1 158 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
14 27 B A S S+ 0 0 42 158 8 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 28 B Y S S- 0 0 121 158 8 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
16 29 B C S S- 0 0 32 158 1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
17 30 B K + 0 0 69 158 10 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
18 31 B E > - 0 0 74 158 5 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
19 32 B K T 3 S- 0 0 160 158 49 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
20 33 B G T 3 S+ 0 0 79 158 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
21 34 B H < - 0 0 24 158 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
22 35 B W > - 0 0 115 158 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
23 36 B A T 3 S+ 0 0 23 158 70 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24 37 B K T 3 S+ 0 0 148 158 24 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
25 38 B D S < S+ 0 0 111 158 20 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
26 39 B C - 0 0 2 158 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
27 40 B P S S+ 0 0 84 158 7 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
28 41 B K S S+ 0 0 101 158 10 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
29 42 B K S S- 0 0 63 158 60 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
30 43 B P + 0 0 87 158 42 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
31 44 B R + 0 0 115 157 56 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
32 45 B G > - 0 0 25 148 38 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
33 46 B P T 3 S+ 0 0 140 146 70 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
34 47 B R T 3 S- 0 0 148 136 55 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
35 48 B G < - 0 0 42 136 76 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
36 49 B P + 0 0 63 135 39 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
37 50 B R > - 0 0 145 126 57 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
38 51 B P T 3 S+ 0 0 142 124 15 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
39 52 B Q T 3 0 0 153 113 17 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
40 53 B T < 0 0 102 111 33 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTT
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 14 B G 0 0 105 131 29 GGGGGGGGGGGGGGGGGGGGG GGGGGGGGGG GG GGGGGGG DGGGDG E G EEEE EEEEEEE
2 15 B E > + 0 0 108 146 60 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE VV DADDDDD EDDDDV T D TTTTGTTTTTTT
3 16 B R T 3 S+ 0 0 231 146 39 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR RR RRQQQQQ EQQQRR R K KKKKKKKKKKKK
4 17 B R T 3 S+ 0 0 246 148 46 RRRRRRRRRKKKKRRRKRKRRMRRRRRRRKKR KK RKRRRRRRRRRRRK R R RRRRGRRRRRRR
5 18 B R < + 0 0 104 151 33 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR GG KGKKKKKRRKKKGG RQRQRRRRRRRRRRRR
6 19 B S - 0 0 102 151 48 PPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPS PP ILIIIIIRRIIIPP PKTKPPPPSPPPPPPP
7 20 B Q S S+ 0 0 91 151 69 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ KK PKPPPPPPPPPPHK KPRPKKKKPKKKKKKK
8 21 B L + 0 0 83 155 18 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLVLVLVVVVLIIIIIII
9 22 B D - 0 0 49 155 42 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDEED DDQGDGGGGGDDGGGDDSSDDEDGGGGGEEEEEEE
10 23 B R S S+ 0 0 203 155 24 KKKKKKKKKKKKKKKKKHKKKKHHHHHHCKKC KKKKKKKKKKKKKKKRKKKKKRKKKKKKKKKKKKK
11 24 B D S S+ 0 0 137 158 16 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDDDNDDDDDDD
12 25 B Q S S- 0 0 61 158 5 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
13 26 B C - 0 0 1 158 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
14 27 B A S S+ 0 0 42 158 8 AAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 28 B Y S S- 0 0 121 158 8 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
16 29 B C S S- 0 0 32 158 1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCYCCCCCCCCCCCYCCCCCCCCCCCCCCCCCC
17 30 B K + 0 0 69 158 10 KKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
18 31 B E > - 0 0 74 158 5 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
19 32 B K T 3 S- 0 0 160 158 49 KKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKQRRRRRIKKKKKKKKKRKRKRKKRKKKRRRRERRRRRRR
20 33 B G T 3 S+ 0 0 79 158 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
21 34 B H < - 0 0 24 158 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
22 35 B W > - 0 0 115 158 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
23 36 B A T 3 S+ 0 0 23 158 70 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAVVVVVAAVVVAAIIIAVAIIIIKIIIIIII
24 37 B K T 3 S+ 0 0 148 158 24 KKKKKKKRRKKKKRRRKKKRRKRRRRRRKRRKRRRRRRRRRRRRRRRRRRRRKKKRKRKKKKKKKKKKKK
25 38 B D S < S+ 0 0 111 158 20 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDEDDDDDDDDDEHEDDDDNDDDDDDD
26 39 B C - 0 0 2 158 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
27 40 B P S S+ 0 0 84 158 7 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTPPPPPPPPPPPPPPPPPPPPPPP
28 41 B K S S+ 0 0 101 158 10 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKPKKKKKKKKKKKKKKKKKKKKKKK
29 42 B K S S- 0 0 63 158 60 KKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKRKKKKKRRKRRRRRKPRRRKKRRRKNKRRRRLRRRRRRR
30 43 B P + 0 0 87 158 42 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPKKPPPTPTTPKPKPPPPVPPPPPPP
31 44 B R + 0 0 115 157 56 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSSSSSAR RRRRRNKRKRSSKKRRRKGGGGSRRRRRRR
32 45 B G > - 0 0 25 148 38 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GG RGKKDPRPNNNNGDDDDDDD
33 46 B P T 3 S+ 0 0 140 146 70 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLLLLLS G ASPPQRKRSSSSASSSSSSS
34 47 B R T 3 S- 0 0 148 136 55 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR R QEEEKHPHKKKK KKKKKKK
35 48 B G < - 0 0 42 136 76 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRRRRRG P PDKKKNTDKKKK KKKKKKK
36 49 B P + 0 0 63 135 39 PPPPSSSPPPPPPPPPPPPPPPPPPPLLPPPPPPPPPS T PPPPPQPQPPPP SSSSSSS
37 50 B R > - 0 0 145 126 57 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHRRD R W NNAK K TTTTTTT
38 51 B P T 3 S+ 0 0 142 124 15 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP N P AAPP PPPPPPP
39 52 B Q T 3 0 0 153 113 17 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ K R QQ
40 53 B T < 0 0 102 111 33 TTTTTTTTTTTTTTTTTATTTTAAAAAATTTTTTTTT AA
## ALIGNMENTS 141 - 157
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 14 B G 0 0 105 131 29 G GG
2 15 B E > + 0 0 108 146 60 G GGGGGGGGG GE QK
3 16 B R T 3 S+ 0 0 231 146 39 K KKKKKKKKK RR KK
4 17 B R T 3 S+ 0 0 246 148 46 GKGGGGGGGGG RR SG
5 18 B R < + 0 0 104 151 33 RQRRRRRRRRR EAKER
6 19 B S - 0 0 102 151 48 PKPPPPPPPPP STQAT
7 20 B Q S S+ 0 0 91 151 69 PPPPPPPPPPP RGRSA
8 21 B L + 0 0 83 155 18 LLLLLLLLLLLVITLLL
9 22 B D - 0 0 49 155 42 GDGGGGGGGGGAGRKQG
10 23 B R S S+ 0 0 203 155 24 KKKKKKKKKKKKASKKK
11 24 B D S S+ 0 0 137 158 16 NDNNNNNNNNNDDDDNN
12 25 B Q S S- 0 0 61 158 5 QQQQQQQQQQQEEAQQQ
13 26 B C - 0 0 1 158 0 CCCCCCCCCCCCCCCCC
14 27 B A S S+ 0 0 42 158 8 AAAAAAAAAAAAAFATA
15 28 B Y S S- 0 0 121 158 8 YYYYYYYYYYYFRRYYY
16 29 B C S S- 0 0 32 158 1 CCCCCCCCCCCCCCCCC
17 30 B K + 0 0 69 158 10 KKKKKKKKKKKHHGKKK
18 31 B E > - 0 0 74 158 5 EEEEEEEEEEEEREEQE
19 32 B K T 3 S- 0 0 160 158 49 EKEEEEEEEEEKTEIIE
20 33 B G T 3 S+ 0 0 79 158 0 GGGGGGGGGGGGGGGGG
21 34 B H < - 0 0 24 158 0 HHHHHHHHHHHHHHHHH
22 35 B W > - 0 0 115 158 0 WWWWWWWWWWWWWWWWW
23 36 B A T 3 S+ 0 0 23 158 70 KAKKKKKKKKKKAAKKK
24 37 B K T 3 S+ 0 0 148 158 24 KGKKKKKKKKKKRRRKR
25 38 B D S < S+ 0 0 111 158 20 NENNNNNNNNNDDDNEE
26 39 B C - 0 0 2 158 0 CCCCCCCCCCCCCCCCY
27 40 B P S S+ 0 0 84 158 7 PSPPPPPPPPPPPTPPS
28 41 B K S S+ 0 0 101 158 10 KKKKKKKKKKKKERKFK
29 42 B K S S- 0 0 63 158 60 LKLLLLLLLLLLEGDKR
30 43 B P + 0 0 87 158 42 VKVVVVVVVVVQKGPPP
31 44 B R + 0 0 115 157 56 SKSSSSSSSSSKRGYER
32 45 B G > - 0 0 25 148 38 GPGGGGGGGGGKGGSGE
33 46 B P T 3 S+ 0 0 140 146 70 RAAAAAAAAAESGHKG
34 47 B R T 3 S- 0 0 148 136 55 H KRYLIE
35 48 B G < - 0 0 42 136 76 D VKGPMG
36 49 B P + 0 0 63 135 39 Q P PKPH
37 50 B R > - 0 0 145 126 57 K Q R
38 51 B P T 3 S+ 0 0 142 124 15 P K
39 52 B Q T 3 0 0 153 113 17 D
40 53 B T < 0 0 102 111 33 A
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 14 B 0 0 0 0 0 0 0 89 0 0 0 0 0 0 0 0 0 9 0 2 131 0 0 0.384 12 0.71
2 15 B 2 0 0 0 0 0 0 8 1 0 0 8 0 0 0 1 1 72 0 8 146 0 0 1.025 34 0.40
3 16 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 17 5 1 0 0 146 0 0 0.699 23 0.61
4 17 B 0 0 0 1 0 0 0 8 0 0 1 0 0 0 82 9 0 0 0 0 148 0 0 0.650 21 0.54
5 18 B 0 0 0 0 0 0 0 3 1 0 0 0 0 0 86 7 2 1 0 0 151 0 0 0.590 19 0.66
6 19 B 0 1 6 0 0 0 0 0 1 80 7 2 0 0 1 2 1 0 0 0 151 0 0 0.838 27 0.51
7 20 B 0 0 0 0 0 0 0 1 1 17 1 0 0 1 2 11 68 0 0 0 151 0 0 1.007 33 0.30
8 21 B 5 90 5 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 155 0 0 0.423 14 0.81
9 22 B 0 0 0 0 0 0 0 17 1 0 1 0 0 0 1 1 1 6 0 72 155 0 0 0.921 30 0.57
10 23 B 0 0 0 0 0 0 0 0 1 0 1 0 1 5 8 83 0 1 0 0 155 0 0 0.681 22 0.76
11 24 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 91 158 0 0 0.299 9 0.83
12 25 B 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 98 1 0 0 158 0 0 0.106 3 0.94
13 26 B 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 158 0 0 0.000 0 1.00
14 27 B 0 0 0 0 1 0 0 0 97 0 0 2 0 0 0 0 0 0 0 0 158 0 0 0.132 4 0.92
15 28 B 0 0 0 0 1 0 98 0 0 0 0 0 0 0 1 0 0 0 0 0 158 0 0 0.106 3 0.91
16 29 B 0 0 0 0 0 0 1 0 0 0 0 0 99 0 0 0 0 0 0 0 158 0 0 0.068 2 0.99
17 30 B 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 97 0 1 0 0 158 0 0 0.174 5 0.89
18 31 B 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 98 0 0 158 0 0 0.115 3 0.94
19 32 B 0 0 2 0 0 0 0 0 0 0 0 1 0 0 13 75 1 8 0 0 158 0 0 0.843 28 0.51
20 33 B 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 158 0 0 0.000 0 1.00
21 34 B 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 158 0 0 0.000 0 1.00
22 35 B 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158 0 0 0.000 0 1.00
23 36 B 6 0 9 0 0 0 0 0 75 0 0 0 0 0 0 9 0 0 0 0 158 0 0 0.826 27 0.30
24 37 B 0 0 0 0 0 0 0 1 0 0 0 0 0 0 26 73 0 0 0 0 158 0 0 0.609 20 0.75
25 38 B 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 8 87 158 0 0 0.484 16 0.79
26 39 B 0 0 0 0 0 0 1 0 0 0 0 0 99 0 0 0 0 0 0 0 158 0 0 0.038 1 0.99
27 40 B 0 0 0 0 0 0 0 0 0 97 1 1 0 0 0 0 0 0 0 0 158 0 0 0.136 4 0.92
28 41 B 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 97 0 1 0 0 158 0 0 0.183 6 0.89
29 42 B 0 8 0 0 0 0 0 1 0 1 0 0 0 0 17 72 0 1 1 1 158 0 0 0.893 29 0.39
30 43 B 7 0 0 0 0 0 0 1 0 86 0 2 0 0 0 4 1 0 0 0 158 0 0 0.578 19 0.58
31 44 B 0 0 0 0 0 0 1 3 1 0 11 0 0 0 78 4 0 1 1 0 157 0 0 0.817 27 0.44
32 45 B 0 0 0 0 0 0 0 85 0 2 1 0 0 0 1 2 0 1 3 5 148 0 0 0.676 22 0.61
33 46 B 0 3 0 0 0 0 0 2 8 72 10 0 0 1 2 1 1 1 0 0 146 0 0 1.093 36 0.30
34 47 B 0 1 1 0 0 0 1 0 0 1 0 0 0 2 82 10 1 3 0 0 136 0 0 0.759 25 0.45
35 48 B 1 0 0 1 0 0 0 78 0 2 0 1 0 0 4 11 0 0 1 2 136 0 0 0.872 29 0.24
36 49 B 0 1 0 0 0 0 0 0 0 86 8 1 0 1 0 1 2 0 0 0 135 0 0 0.591 19 0.61
37 50 B 0 0 0 0 0 1 0 0 1 0 0 6 0 1 87 2 1 0 2 1 126 0 0 0.633 21 0.42
38 51 B 0 0 0 0 0 0 0 0 2 97 0 0 0 0 0 1 0 0 1 0 124 0 0 0.176 5 0.84
39 52 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 97 0 0 1 113 0 0 0.152 5 0.83
40 53 B 0 0 0 0 0 0 0 0 10 0 0 90 0 0 0 0 0 0 0 0 111 0 0 0.323 10 0.67
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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