Density

The Density is calculated by the summation of atom mass for all atoms encountered within a sphere of a given radius (centered either at the CA [alpha carbon] or LHA [Last Heavy Atom] in the side chain of this residue), and then dividing it by the volume of the sphere.

Placing the cursor above this element: pop-up area will show the position (sequence number and AA three letter code) for selected amino acid and the numerical values for Density (at interface (IFR), internal and sliding window of given size) for this amino acid.
Left mouse click: no action
Right mouse click: on any of the "Density" will generate following menu and actions:

A) A user may select either Ca or Last Heavy Atom (LHA) in the side chain as a center of the sphere for calculating "Density"

B) A user may select among 5 possible radius values for the sphere:

C) A user may select among 4 possible values for the sliding window size (for the size of 5: a value for this parameter is collected over the central residue and other 2 from the each side of the central one, summed and divided by 5):

D) STING it "Density": This option generates structural presentation with color coding of the amino acids corresponding to the JPD row "Density" color coding. The area of gaps is where the colors are going to be different from the rest of the protein. Amino acids are presented in CPK rendering.

E) STING it "Density IFR": This option generates structural presentation with color coding of the amino acids corresponding to the JPD row "Density IFR." color coding. The area of interface between the two chains is where the colors are going to be different from the rest of the protein. Amino acids are presented in CPK rendering.

F) STING it "Sliding Window Density IFR.": This option generates structural presentation with color coding of the amino acids corresponding to the JPD row "Density IFR " color coding. The area of gaps is where the colors are going to be different from the rest of the protein. Amino acids are presented in CPK rendering.