After opening ConSSeq module, a user gets following display
(in this case, STINGit option invoked automatically 1cho.pdb):
The first amino acid in the sequence is highlighted in red
color both on "sequence" and "logo" display area of the
ConSSeq.
A user may scroll the horizontal bar below the sequence frame
at the ConSSeq and arrive in general region of the amino acid of interest
(say, the number35, in this case).
Clicking at the sequence number 35
within the sequence frame of the ConSSeq, will produce effect both on SMS
sequence and structure (chime) frame. At the same time, both the sequence
and the logo frame in the ConSSeq will be highlighting chosen sequence position
(35)in red color.
If the user wants to have other than logo representation
of the frequency of amino acids occupying this particular position (in this
case number 36), he/she may click at the "bars"
button and the following display will be produced by the ConSSeq:
Bar code on the lower left portion of the ConSSeq
display, represents frequency of all 20 amino acids occupying this particular
position (36 in this case) within the sequence:
the most abundant one is the ARG with 19%, LYS with 14% and so one...
